Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Erwinia tracheiphila SCR3

 Score =  277 bits (708), Expect = 8e-79
 Identities = 154/378 (40%), Positives = 230/378 (60%), Gaps = 6/378 (1%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F+ LGL+A IL+++   GY  PSPIQ + IP +LAG+DV+  AQTG+GKTA F+LP+L  
Sbjct: 8   FSDLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLNN 67

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAV-VFGGVKINPQMQRMC 121
           +  G  V+A Q+  L+L PTRELA Q+ + V  + +H+   S V ++GG + + Q++ + 
Sbjct: 68  IDAG--VKAPQI--LVLAPTRELAVQVAEAVTGFSKHMRGLSVVALYGGQRYDVQLRALR 123

Query: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
           +G  ++V TPGRL+D   +  +    L  LVLDEAD ML MGFI D+  I+  +PE  Q 
Sbjct: 124 QGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQT 183

Query: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEG 241
            LFSAT    IR + K  + +P E+ +  + +T   + Q  + A   +K D LV+ ++  
Sbjct: 184 ALFSATMPEAIRRITKRFMKDPQEVRIQSSITTRPDISQSYWTA-YGRKTDALVRFLEAE 242

Query: 242 NWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATD 301
           ++   ++F+RTK+    +A  L   G  +AA++G+ +Q  R + L   K G + IL+ATD
Sbjct: 243 DFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATD 302

Query: 302 IAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERL 361
           +AARG+D+ ++  VVNF++P  AE YVHRIGRTGRAG  G+A+  V   E   L  IER 
Sbjct: 303 VAARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERT 362

Query: 362 TQALLPRVNLAGFEPTNQ 379
            +  +P V L   E   Q
Sbjct: 363 MKLTIPEVELPNAELLGQ 380