Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  468 bits (1204), Expect = e-136
 Identities = 253/463 (54%), Positives = 330/463 (71%), Gaps = 26/463 (5%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGL+  IL+AI E+GY  P+PIQ QAIPAVL G+D+MA+AQTGTGKTAGFTLP+L
Sbjct: 1   MSFDSLGLNPEILRAIAEQGYVEPTPIQQQAIPAVLQGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  ELLAKG-PKVRANQ-VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ 118
           ELL K  P  +  + VRALILTPTRELAAQI +NV  Y R+L ++S VVFGGV INPQM 
Sbjct: 61  ELLVKNQPHAKGRRPVRALILTPTRELAAQIGENVRDYSRYLNIRSLVVFGGVSINPQMM 120

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
           ++  G D+L+ATPGRL+DL +QNAVK D +EILVLDEADRMLDMGFI DI ++L  LP +
Sbjct: 121 KLRGGVDVLIATPGRLLDLEHQNAVKLDGIEILVLDEADRMLDMGFIHDIRRVLAKLPAR 180

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           RQNLLFSATFS EI+ LA+ L++NP+E+ V+  N+ +  V Q ++  D K+K ++L +++
Sbjct: 181 RQNLLFSATFSDEIKALAEKLLHNPLEVEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
            +GNWQQVLVF RTKHGAN LA  LN+ G+ +AAIHGNKSQGARTRALADFK+G++R+LV
Sbjct: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATDIAARG+DI +LP VVN+ELP + EDYVHRIGRTGRA   G+A+SLV   E   L  I
Sbjct: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360

Query: 359 ERLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKP-------------KKPKKVEG-- 403
           ERL +  +PR+   G+E      +  +   P++  +              ++P++ EG  
Sbjct: 361 ERLLKKEIPRIETPGYE-----VDPSIKAEPIQNGRQGGGGRGQGGGGRGQQPRRAEGGA 415

Query: 404 ---AGENKGSVAENKPKAGHRGQPTGQARTAKKGGTHSEPKKP 443
              +G+      ++KP AG     +G+ + A +G     P+KP
Sbjct: 416 PKSSGKPPRRNNDSKP-AGENPWRSGEGKPAGEGQRRRRPRKP 457