Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Dickeya dadantii 3937

 Score =  462 bits (1190), Expect = e-135
 Identities = 252/453 (55%), Positives = 318/453 (70%), Gaps = 13/453 (2%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F SLGLSA IL+A+EE+GY  P+P+Q QAIP VL G+D+MA+AQTGTGKTAGFTLP+L
Sbjct: 1   MSFESLGLSADILRAVEEQGYREPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPLL 60

Query: 61  ELLAKGPKVRANQ--VRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQ 118
           +LL   P     +  VRALILTPTRELAAQI +NV  Y ++L L+S VVFGGV INPQM 
Sbjct: 61  QLLNGRPSQAKGRRPVRALILTPTRELAAQIGENVQAYSKYLRLRSLVVFGGVSINPQMM 120

Query: 119 RMCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEK 178
           ++  G DIL+ATPGRL+DL +QNAV    +EILVLDEADRMLDMGFI DI ++L  LP K
Sbjct: 121 KLRGGVDILIATPGRLLDLEHQNAVDLSHVEILVLDEADRMLDMGFIHDIRRVLAKLPPK 180

Query: 179 RQNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLV 238
           RQNLLFSATFS EI+ELA  L+ NP  + V   N+ +  V Q ++  D K+K ++L  L+
Sbjct: 181 RQNLLFSATFSDEIKELAGKLLTNPASVEVVRRNTPSELVTQHVHFVDKKRKRELLSHLI 240

Query: 239 KEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
            + +W+QVLVF RTKHGAN LA  LN+ G+TAAAIHGNKSQGARTRALA+FK G++R+LV
Sbjct: 241 GKHDWRQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALANFKDGDIRVLV 300

Query: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAI 358
           ATDIAARG+DI QLP VVN+ELP + EDYVHRIGRTGRA   G+A+SLV   E   L  I
Sbjct: 301 ATDIAARGLDIDQLPHVVNYELPNVPEDYVHRIGRTGRAASTGEALSLVCVDEHKLLRDI 360

Query: 359 ERLTQALLPRVNLAGFEPTNQLPESKLDT--------RPLKPKKPKKPKKVEGAGENKGS 410
           ERL +  +PR+ +AG+EP   +    +          R   P++  +P+  E A   +G 
Sbjct: 361 ERLLKREIPRMEIAGYEPDPTIKAEPIQNGRQGGRGGRGGAPRQGDRPQG-ERASRPQGD 419

Query: 411 VAENKPKAGHRGQPTGQARTAKKGGTHSEPKKP 443
              ++P+     +P GQ R   +      P+KP
Sbjct: 420 -RPHQPRRDGAARPAGQ-RPEGQSARRRPPRKP 450