Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  292 bits (747), Expect = 2e-83
 Identities = 171/447 (38%), Positives = 256/447 (57%), Gaps = 17/447 (3%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F +  L+  +L+A++E GY  P+PIQ + IP  LAG+D++  AQTGTGKTA + LP   L
Sbjct: 8   FENFKLNKQLLEAVKEAGYTKPTPIQEKTIPLALAGQDILGIAQTGTGKTAAYVLP---L 64

Query: 63  LAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
           L K    +    RALIL PTREL  QI+  ++  G++  L+ A ++GGV   PQ++++  
Sbjct: 65  LMKTKYAQGEHARALILAPTRELVIQIEQAILTLGKYTDLRYACLYGGVGPTPQIEKIRA 124

Query: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
           G DI++ATPGR MD+Y++  +    ++ +V+DEAD+M+DMGF+  I  IL+++P KRQN+
Sbjct: 125 GVDIIIATPGRFMDIYSKGELFVRNIKTMVMDEADKMMDMGFMPQIRSILEVIPVKRQNM 184

Query: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIY-PADVKKKPDMLVKLVKEG 241
           LFSATFS  +  ++   +  P  I ++   +TA TV Q  Y   ++K K  +L  L++  
Sbjct: 185 LFSATFSERVERISHEFLEFPERIEIALQATTADTVAQTKYFVPNLKTKITLLDHLLQNE 244

Query: 242 NWQQVLVFMRTKHGANRLATYLNEQGL-TAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
              +V+VF +++  A  +  YL  +       IH NK Q  R  ++ DFK+G+VRILVAT
Sbjct: 245 EINRVIVFTKSRKNAEAVYQYLERRKHGEIRVIHANKGQNTRINSVDDFKSGDVRILVAT 304

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARG+DI  +  VVNF++P I EDYVHR+GRTGRA + G A + V+  E      IE 
Sbjct: 305 DVAARGLDISMVSHVVNFDVPLIYEDYVHRVGRTGRAEQEGAAFTFVNPAEEYHFGRIEE 364

Query: 361 LTQALLPRVNLAGFEPTNQLP--ESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKP-- 416
           + +  +P   +         P  E +   R +  ++ K     +GA   K   A   P  
Sbjct: 365 IIRMEVPEEPIPKEVRIADTPFAEKQAYDREIDKQRQKADPTFKGAFHEKKVRANTNPHY 424

Query: 417 ---KAGHRGQPTGQAR-----TAKKGG 435
              K   RG    +A+       KKGG
Sbjct: 425 NPEKKKVRGNKNSKAKRNRNQMKKKGG 451