Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 372 a.a., DEAD/DEAH box helicase from Bacteroides stercoris CC31F

 Score =  366 bits (939), Expect = e-106
 Identities = 188/372 (50%), Positives = 256/372 (68%), Gaps = 1/372 (0%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F  L ++ PILKAIEEKGY  P+PIQ++AIPA L GKD++  AQTGTGKTA F +P +
Sbjct: 1   MTFKDLNITEPILKAIEEKGYANPTPIQVKAIPAALTGKDILGCAQTGTGKTAAFAIPFI 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           + L +  K R   ++ALILTPTRELA QI + +  Y ++  ++  V+FGGV    Q+  +
Sbjct: 61  QHL-QALKNRDKSIKALILTPTRELALQISECIDDYAKYTQVRHGVIFGGVNQRAQVNML 119

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            KG DILVATPGRL+DL NQ  +  D +   VLDEADRMLDMGFI DI ++L  LP+++Q
Sbjct: 120 HKGVDILVATPGRLLDLMNQGYIHLDNVRHFVLDEADRMLDMGFIHDIKRLLPKLPKEKQ 179

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
            L FSAT    I  L   L+  PV+I+++P +ST  T+EQ IY  + K+K  +L+ ++ +
Sbjct: 180 TLFFSATMPDTIIALTNSLLKQPVKIAITPKSSTVDTIEQTIYFVEKKEKSKLLISILHK 239

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
              Q VLVF RTKH A+R+   L++ G+ + AIHGNKSQ AR  AL +FK G++R+++AT
Sbjct: 240 TEGQSVLVFSRTKHNADRIVRVLSKAGIGSQAIHGNKSQNARQSALENFKTGKIRVMIAT 299

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           DIAARGIDI +LP V+N++LP + E YVHRIGRTGRAG +G A++  S  E   +  I++
Sbjct: 300 DIAARGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNLGTALTFCSQEERKLVNDIQK 359

Query: 361 LTQALLPRVNLA 372
           LT   L +V  A
Sbjct: 360 LTGKKLSKVEFA 371