Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 491 a.a., DEAD/DEAH box helicase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  350 bits (897), Expect = e-101
 Identities = 200/452 (44%), Positives = 279/452 (61%), Gaps = 14/452 (3%)

Query: 6   LGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAK 65
           +GL+  +L+A+   GY  P+PIQ +AIP V+AGKD++  AQTGTGKTA F LPIL  LA+
Sbjct: 1   MGLNKALLQALASTGYTKPTPIQEKAIPDVMAGKDLLGIAQTGTGKTAAFALPILHRLAE 60

Query: 66  G---PKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCK 122
               PK R  +V  L+L+PTRELA QI D+   YG HL  + AV+FGGVK   Q + + +
Sbjct: 61  NRIAPKPRTTRV--LVLSPTRELATQIGDSFKAYGAHLGFRVAVIFGGVKYGGQERALQQ 118

Query: 123 GADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
           G DILVA PGRL+D   Q  +     EI VLDEAD+MLD+GFI+ I +I+  +P KRQNL
Sbjct: 119 GLDILVAAPGRLLDHIQQKNLDLSSTEIFVLDEADQMLDLGFIKPIRQIVAKIPAKRQNL 178

Query: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKEGN 242
            FSAT  +EI +LA  L+ +PV++ V+P ++T + + Q +   +  +K  +L ++  +  
Sbjct: 179 FFSATMPSEIGKLAGELLKDPVKVQVTPQSTTVQRISQSVVYIEQGRKRALLTEMFSDPE 238

Query: 243 WQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDI 302
           + + LVF +TKHGA+++A YL   G+ A AIHGNKSQ  R R L  FK G++R+LVATDI
Sbjct: 239 YTRCLVFTKTKHGADKVAAYLEAGGVEAGAIHGNKSQPQRERTLEAFKKGKLRVLVATDI 298

Query: 303 AARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIERLT 362
           AARGID+  +  VVNFELP + E YVHRIGRT RAG+ G A+S V+  E   L  IE++T
Sbjct: 299 AARGIDVDGVSHVVNFELPHVPESYVHRIGRTARAGKDGTAVSFVAGDEMKLLRDIEKVT 358

Query: 363 QALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEG----AGENKGSVAENKP-K 417
           +  +P ++    +   QL  + + T     KK   P++  G     G+ +G      P +
Sbjct: 359 RQKIPAIDRRNDKALGQLDATIMATG--VGKKATMPEREGGERNEGGQGRGGRGRRAPHR 416

Query: 418 AGHRGQPTGQARTAKKGGTHSEPKKPTKRPVR 449
            G R +  GQ    ++      P  P  RP R
Sbjct: 417 EGVRPEGGGQPHRQRRNRPGETPAAP--RPER 446