Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., RNA helicase CrhR from Azospirillum sp. SherDot2

 Score =  308 bits (789), Expect = 2e-88
 Identities = 184/456 (40%), Positives = 254/456 (55%), Gaps = 37/456 (8%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M F+ LGL   +LK++E   Y  P+P+QL AIP  L G+D++A A+TGTGKTA F LP L
Sbjct: 1   MTFSELGLHPLVLKSLEAFEYTVPTPVQLAAIPPALQGRDILATAETGTGKTAAFMLPAL 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
              A+ P   A   R L+L PTRELA Q+ D    Y + + L    V GG+    Q++ +
Sbjct: 61  TRTAELPLNGAATPRVLVLAPTRELAKQVTDAARKYAKFMKLNIVDVVGGMPYREQLRLL 120

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            +  D+LV TPGRL+D   +  +  D++E+L+LDEADRMLDMGF+ D+  I K  P  RQ
Sbjct: 121 SRPVDVLVCTPGRLLDHVARRRISLDEVEVLILDEADRMLDMGFLDDVETIAKCCPPTRQ 180

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPAD-VKKKPDMLVKLVK 239
            +LF+AT    + +LA  L+ NP  ++V  + +TA  VEQ ++ AD +  K  +L     
Sbjct: 181 TMLFTATLDRRMAQLAGNLLRNPERVAVE-SQATAINVEQRLHHADDLDHKRRLLQHFAA 239

Query: 240 EGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVA 299
           +    + ++F  TK  A+ LA  L+  G  AAA+HG+  Q  R R L   + G+VR+LVA
Sbjct: 240 QEEVGKAIIFAATKRDADTLAEELSAAGHAAAALHGDMDQTKRNRTLQRLRTGQVRLLVA 299

Query: 300 TDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIE 359
           TD+AARGID+  +  V+NF+LP+ AEDYVHRIGRTGRAG  G AIS  +  +   L  IE
Sbjct: 300 TDVAARGIDVRDITHVINFDLPRSAEDYVHRIGRTGRAGASGVAISFAARADRETLVRIE 359

Query: 360 RLTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKAG 419
           R T+A L    + G EPT                   +P    GAG            AG
Sbjct: 360 RYTKATLEVHVVPGLEPT-------------------RPFTTGGAGR----------PAG 390

Query: 420 HRGQPTGQA-----RTAKKGGTHSEPKKPTKRPVRN 450
             G+P+G A     R  +  G H+ P+ P     RN
Sbjct: 391 RSGRPSGGAGKPWHRNGESKGPHA-PRGPRPDYARN 425