Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 483 a.a., ATP-dependent RNA helicase RhlE from Alteromonas macleodii MIT1002

 Score =  512 bits (1319), Expect = e-150
 Identities = 274/469 (58%), Positives = 333/469 (71%), Gaps = 23/469 (4%)

Query: 1   MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL 60
           M FT LGL+ P+L+AIE++G++TPSPIQ +AIP VL GKDV+AAAQTGTGKTAGF LPIL
Sbjct: 1   MSFTQLGLAEPLLRAIEKRGFSTPSPIQEKAIPEVLQGKDVLAAAQTGTGKTAGFGLPIL 60

Query: 61  ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRM 120
           + L +G  V  N VRALILTPTRELAAQ+++++  +   LPLK+AVVFGGV INPQM ++
Sbjct: 61  QRLMEGQPVSGNNVRALILTPTRELAAQVEESIRAFSEFLPLKTAVVFGGVGINPQMMKL 120

Query: 121 CKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQ 180
            KG D+L+ATPGRL+DLY QNAVKF QLE+LVLDEADRMLDMGFI DI ++LKLLP++RQ
Sbjct: 121 RKGVDVLIATPGRLLDLYQQNAVKFSQLEVLVLDEADRMLDMGFIHDIKRVLKLLPQERQ 180

Query: 181 NLLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE 240
           +LLFSATFS EI  LAK +  NPV IS +PAN+T   V+Q +   D  KK   L+ L+K+
Sbjct: 181 SLLFSATFSDEITALAKTITRNPVSISTAPANTTVEAVQQHLVTIDKSKKTTALICLIKQ 240

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
             W+QVLVF RTKHGANR+A  L    + +AAIHGNKSQGART+ALADFK G +++LVAT
Sbjct: 241 QKWEQVLVFSRTKHGANRIAEKLTRSKIPSAAIHGNKSQGARTKALADFKNGAIKVLVAT 300

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           DIAARGIDI +LP VVN +LP  A DYVHRIGRTGRAG  G+A S V A E   L  IE 
Sbjct: 301 DIAARGIDISELPIVVNLDLPNTAADYVHRIGRTGRAGASGQAWSFVCAEELQNLKDIET 360

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEG--------AGENKGS-- 410
           L Q LLPR  L GFEP   +P + L ++P KPKKPKKPK  +G        +GENK S  
Sbjct: 361 LIQKLLPRETLEGFEPQQAVPVTTL-SKPKKPKKPKKPKAPQGESGSEGKRSGENKKSGQ 419

Query: 411 -----VAENKPKAGHR-------GQPTGQARTAKKGGTHSEPKKPTKRP 447
                     P+AG         G+P G+ R+  +G     P K    P
Sbjct: 420 RQGNRSGNGNPRAGKSNSRNNSGGKPAGRRRSGSEGIAAKRPAKRRSNP 468