Pairwise Alignments

Query, 451 a.a., ATP-dependent RNA helicase RhlE from Vibrio cholerae E7946 ATCC 55056

Subject, 502 a.a., ATP-dependent RNA helicase from Agrobacterium fabrum C58

 Score =  347 bits (889), Expect = e-100
 Identities = 196/445 (44%), Positives = 265/445 (59%), Gaps = 33/445 (7%)

Query: 3   FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILEL 62
           F  LGLS  I+ ++ + GY TP+PIQ +AIP +L G+D++  AQTGTGKTA F LPI+E+
Sbjct: 16  FNELGLSEKIVASVTQLGYTTPTPIQAKAIPLLLEGRDLIGLAQTGTGKTAAFGLPIIEM 75

Query: 63  LAKGPKVRANQV-RALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMC 121
           L K     AN+  R LIL PTREL  QI DN+  + +  PL+   V GG  IN Q  ++ 
Sbjct: 76  LMKQADRPANRTTRTLILAPTRELVNQIGDNLRSFVKKTPLRINQVVGGASINKQQLQLE 135

Query: 122 KGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQN 181
           KG DILVATPGRL+DL  +NA+   ++  LVLDEAD+MLD+GFI D+ KI +++P KRQ 
Sbjct: 136 KGTDILVATPGRLLDLIARNAISLSKVTYLVLDEADQMLDLGFIHDLRKISRMVPPKRQT 195

Query: 182 LLFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCI-YPADVKKKPDMLVKLVKE 240
           LLFSAT    I ELA   + +P+++ V+P    A  VEQ + + A    K D+L K + E
Sbjct: 196 LLFSATMPKAISELASNFLTDPIKVEVTPPGKAADKVEQYVHFVAGKNDKTDLLKKSLNE 255

Query: 241 GNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVAT 300
               + +VF+RTKHGA +L  +L   G   A+IHGNKSQG R RAL  FK GE+++LVAT
Sbjct: 256 NPDGRSIVFLRTKHGAEKLYKHLEHIGFKVASIHGNKSQGQRERALKGFKDGEIKVLVAT 315

Query: 301 DIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEAPELFAIER 360
           D+AARGIDIP +  V N++LP++ + YVHRIGRT RAG  G AI+  +  E   L  IE+
Sbjct: 316 DVAARGIDIPAVTHVFNYDLPEVPDAYVHRIGRTARAGRDGIAIAFCAPDETRLLHDIEK 375

Query: 361 LTQALLPRVNLAGFEPTNQLPESKLDTRPLKPKKPKKPKKVEGAGENKGSVAENKPKAGH 420
           L +  +P  +                 RP     P +P    G   N G           
Sbjct: 376 LMKIDIPVAS---------------GERPAGLASPTRPNNNRGGRNNNG----------- 409

Query: 421 RGQPTGQARTAKKGGTHSEPKKPTK 445
                GQ R  ++GG H+   +P++
Sbjct: 410 -----GQPRGPREGGRHNGESRPSR 429