Pairwise Alignments

Query, 447 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., Malate-2H(+)/Na(+)-lactate antiporter from Alteromonas macleodii MIT1002

 Score = 81.6 bits (200), Expect = 5e-20
 Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 14/226 (6%)

Query: 6   SSKPQQPNAFALLPLMVFLLLFMGVGSYLTWQGVEFAFYQLPAPVAVLPAVVLAIALSKE 65
           +++P     F L+PL++ +L  +G   ++ W G      +     +VL A  LA A++  
Sbjct: 234 TTEPATKARFMLVPLIIMVLSMVG---FMFWTG-NGVLSEGSGSKSVLYATALATAIAYG 289

Query: 66  SL--------NRAIEQFLRGVGHSDIMAMCIIYLLAGAFAAVAKATGGVDATVNLGLALL 117
            L          A+E   +G+G  +++ +  I LL+       K  G       +    L
Sbjct: 290 LLLIHKRFTHKEAVEIGFKGMG--ELLPLVTIVLLSLTLGNSLKVLGTGVFVAGIVGEYL 347

Query: 118 PASLILPGLFVISAFVATAMGTSMGTIAAIAPVALGIAQAADLNLGLTAGVVLSGAMFGD 177
           P  LI+P LF+  A ++   GTS GT A + P+ + + Q+  L   L  G +L G +FGD
Sbjct: 348 PLVLIVPMLFIAGAIMSFTTGTSWGTFAILIPIGVPLIQSLGLPPSLVIGAILGGGIFGD 407

Query: 178 NLSIISDTTIAATRSQGCHMRDKFKENIRIALPAALLALVVFTFSS 223
           + S ISDTT  ++ + G  +    K     AL A  L L+ +  +S
Sbjct: 408 HCSPISDTTAVSSLAAGTDVLTHVKTQFPYALFAGALTLIAYFVAS 453



 Score = 43.9 bits (102), Expect = 1e-08
 Identities = 50/219 (22%), Positives = 103/219 (47%), Gaps = 27/219 (12%)

Query: 234 IEWLKVLPYLTILVLAVMGLNVFLVLLVGILMAAGV----GGLSDGY--SLSALTK--DV 285
           ++W+ V+P L  + +      V L L + +L A  +      ++  Y   ++A+ +  D 
Sbjct: 1   MDWMSVIPPLVAIAVVFWKKEVILALALAVLCAEALILVNADIAGSYMAPINAIERVVDT 60

Query: 286 YAGFGNMQEIFLLSMLIGGMGELMKQQGGLAFLTHHISRMIDKFARSHSDVQKMRASELG 345
            A  GN + + + S+L+G +   ++  GG   +T  ++ +++K       V K R     
Sbjct: 61  AASPGNTR-VLIFSVLVGALLAFIRDSGG---VTATVNFLVNK------GVAKSRKQ--- 107

Query: 346 IAGLVALTNVCT-ANNTVAIIVSGGVAKELAEHNGVTAKRSASLLDIFS---CIMQGVLP 401
           + GL   T +     + ++++ +G  A+ L +  G++  R A ++D  S   CI+  +  
Sbjct: 108 VGGLTMFTGIAVFIESNLSVLTAGIFARGLFDRFGMSRARLAYIIDSTSAPVCILILLNG 167

Query: 402 YGAQALLLGSIFQM--SPLSVVSYSYYCFFLAVAALVAV 438
           +GA  L L   +++  S  SV+  S +  F A+  L+ V
Sbjct: 168 WGAFILSLLDAYELPASSASVLWGSVFFNFYAIFTLLIV 206



 Score = 26.2 bits (56), Expect = 0.002
 Identities = 35/125 (28%), Positives = 50/125 (40%), Gaps = 26/125 (20%)

Query: 70  AIEQFLRGVGHSDIMAMCIIYLLAGAFAAVAKATGGVDATVNLGLALLPASLILPGLFVI 129
           AIE+ +          + I  +L GA  A  + +GGV ATVN               F++
Sbjct: 53  AIERVVDTAASPGNTRVLIFSVLVGALLAFIRDSGGVTATVN---------------FLV 97

Query: 130 SAFVATAMGTSMGTIAAIAPVALGIAQAADLNLG-LTAGVVLSG-----AMFGDNLSIIS 183
           +  VA +     G       +  GIA   + NL  LTAG+   G      M    L+ I 
Sbjct: 98  NKGVAKSRKQVGG-----LTMFTGIAVFIESNLSVLTAGIFARGLFDRFGMSRARLAYII 152

Query: 184 DTTIA 188
           D+T A
Sbjct: 153 DSTSA 157