Pairwise Alignments

Query, 530 a.a., regulatory protein LuxO from Vibrio cholerae E7946 ATCC 55056

Subject, 670 a.a., putative 2-component regulator, interaction with sigma 54 (VIMSS) from Escherichia coli BW25113

 Score =  258 bits (659), Expect = 5e-73
 Identities = 167/421 (39%), Positives = 235/421 (55%), Gaps = 34/421 (8%)

Query: 114 SCMGLPLHFGEQLLGILTLDSLKPDAFDHLSPRSLEILA---AIAAATLKMTLTFSELEN 170
           S + +PL FG    G L L       F   + + L+ +A   AIA        + ++L+ 
Sbjct: 266 SALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQE 325

Query: 171 QAKQTQLRLEELNQEAWSRDSVEIIGNSGPMLAMKADIDVVAPSQFNILIHGETGVGKEL 230
             +Q   +L E  Q   +    +II  S  M  +   +D+VA S   +LI GETG GKE+
Sbjct: 326 SLQQENHQLSE--QLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEV 383

Query: 231 VARTIHQRSNRKRQPLVYVNCAAIPENLLESELFGHVKGAFTGADRARMGKFALADGGTL 290
           +AR IHQ S R+ +PLV +NCAAIP +LLESELFGH KGAFTGA     G+F +ADGGTL
Sbjct: 384 IARAIHQLSPRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTL 443

Query: 291 FLDEIGELPLSAQSKILRALQNHEIQPVGQDRVQTVDVRILAATNRDLKKEVEAGRFRAD 350
           FLDEIG+LPL  Q K+LR LQ  EI+ +G  R   V+VR++AATNRDL + VE  +FR+D
Sbjct: 444 FLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSD 503

Query: 351 LYHRLSVYPIYVPPLRERKGDLSLLAGYFVEQARRKLGITQLKLHGDVLSQLIQYPWPGN 410
           L++RL+V+P+ +PPLR+R  D+ LLA +F ++  R +      +  + L QL+ + WPGN
Sbjct: 504 LFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGN 563

Query: 411 VRELEHVINRAALKAKAR--------QRGRPVTTLKVEDLGELQGPRAAMVEPTAQDEPM 462
           VRELE+VI RA L  +          ++ R + TL  +    L+   A ++ PT  +   
Sbjct: 564 VRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNED--SALRSSMAQLLHPTTPE--- 618

Query: 463 LGEWIGELGLRDATDEFQRHLISETLTQADFNWA---EAARRLQTDRANLTRLAKRLGIT 519
                         DE +R  I + L + +   A    AA RL   R  L    +RLGI+
Sbjct: 619 -------------NDEEERQRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGIS 665

Query: 520 V 520
           V
Sbjct: 666 V 666