Pairwise Alignments

Query, 644 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  239 bits (609), Expect = 4e-67
 Identities = 189/652 (28%), Positives = 307/652 (47%), Gaps = 29/652 (4%)

Query: 13  MSIKQKVVLGVTLAVLASTLIVGVMAQRQAREVLEHRLVDLELPNILKLIKSDIDHEVLQ 72
           M IK K+VL           +V V++   AR     + +D     I + I  +I      
Sbjct: 1   MKIKNKLVLAFVSVAFIPVSLVAVISVMNARTEAVDQFIDGSTREI-RQIDGNIRQFFDG 59

Query: 73  LLASAQQIASNEFV---------QQAIATTERDPATEALLVKQLNNLRDQYRLNDASVAN 123
            L +  Q+A++            Q A A ++  PA    ++++       +         
Sbjct: 60  TLQNVDQMATDSVYTSVNTLKNYQPADAASQPMPAEAQTVIERFARYGATHPAAAILSIG 119

Query: 124 RKTAYY--WNQNGFLRELNQQQDGWFFGFIGS-GKPTMVSMFQEANGEVKMF--ANYQLV 178
            +   Y  W  +  L + + +   W+   + S GK      +     +V +   A   L 
Sbjct: 120 LEDGTYAKWPDDPQLAKYDPRTRPWYKAAMASPGKTVRTPAYYYDKDDVALVGTARALLE 179

Query: 179 NGNTMSG--MSKSMDDMVRLLNSFKIEDTGFVFLTNAQGEVQIHRQKEQVKSSLQQIYGS 236
           NG       +S S+ ++  L+ S K+ ++G+V L    G V +         + + + G 
Sbjct: 180 NGKAKGVFVVSVSLKNLTELVKSIKLGESGYVMLVE-DGVVLV--DPRNAAHNFKPLKGL 236

Query: 237 GAS-ALLNKSGFNLISTDYQGEEVMVASIYIESMDWFLVGTVPVHEVFAELDAVAQRMM- 294
           GA+ A L ++          G   M        + W  +G +   EV AE    A RM  
Sbjct: 237 GAAYAQLAETPQGSTDVVIDGVHYMANVWTSPGLGWRYIGLIEHREVMAE----ATRMTY 292

Query: 295 LTTLAVAAIFIFMGIFLA---NSIAMPINQIAKRFTDLGRGDGDLSQRIEVKGNDEIAQL 351
           LT L V  + +  G+  A     I  PI Q++     + +G+GDL   ++V+G DE A+L
Sbjct: 293 LTALIVGVLVLIFGLIAAAFSKVIVKPIGQVSTGLQSIAQGEGDLRHELQVQGKDETAEL 352

Query: 352 SKGFNGFIEKIHQSIKDVAQTSRELQVAAEGVSRKALVTHDNSQQQRDQTIQVVTAINQM 411
           +  FN F+  I Q I+ +   S  LQ A++  S  A   ++ + +QR+    V TA N+M
Sbjct: 353 AGWFNKFLAAIRQLIQHIGAASANLQNASKVNSEVAHNMNEAAGRQREAVELVSTAFNEM 412

Query: 412 GATISEIASNAATAAETANQASGNADQGRNVVNKAKEAISRLAHDIENTGKVVEQLASTT 471
            AT +E+A + + AAE+A        +G+  +    + ++RL   +  + + + +L + +
Sbjct: 413 VATANEVARSCSGAAESAENGHRRVAEGKQQIEVTTDNVNRLGRRLTESSQAMVELEAGS 472

Query: 472 QEIGSILDAIRGISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRNLASRTASSTEEIQ 531
           + I  IL  IR I+EQTNLLALNAAIEAARAGDQGRGFAVVADEVR LA RT+ ST EI+
Sbjct: 473 RSINQILGTIRAIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRALAKRTSDSTGEIE 532

Query: 532 KMINQLQNDAKNAVSAMDAGKTVTHQGVAASDEAVQVLMSISDRIHDISDRNTQVATATE 591
           +++  L+N  +     M +   ++   V++ + A      I   +++I D+N Q++ A E
Sbjct: 533 QLLGTLENKTQEVTQKMGSCLDLSRASVSSIESARDSFEGIQTSVNEIRDQNLQISAAAE 592

Query: 592 EQSTVVHTINQNIEEINAINEVTTSTAEELADASKSLRELSGRLDKLVGNFK 643
           EQ +V   IN++I++I     +  S A    D S  L  LS  L+ LVG FK
Sbjct: 593 EQHSVAEEINRHIQQIYDEARLVESLANSAQDDSGRLSNLSDELNGLVGRFK 644