Pairwise Alignments

Query, 891 a.a., proton-conducting membrane transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 677 a.a., NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) from Variovorax sp. SCN45

 Score =  214 bits (546), Expect = 1e-59
 Identities = 152/519 (29%), Positives = 261/519 (50%), Gaps = 52/519 (10%)

Query: 45  WQVTWVPGLDLNLSFRLDGLSFLFASLITGIGALIQIYALAYMKEKAARFSFHLYLTLFM 104
           W V  V GL + + F +DGL+ +   ++T +  ++ IY + YM+E      F  Y++LF 
Sbjct: 77  WMV--VGGLKMEVGFMVDGLTAMMMCVVTFVSLMVHIYTIGYMEEDDGYNRFFAYISLFT 134

Query: 105 LAMLGVVVSDNILLLFIFWELTTITSYLLIGFNHDKPVSRKNALQSLLVTGAGGLALLAG 164
            +ML +V+S+N+L LF  WE   + SYLLIGF  +KP +    +++ LV   G    + G
Sbjct: 135 FSMLMLVMSNNMLQLFFGWEAVGLVSYLLIGFWFNKPTAIFANMKAFLVNRVGDFGFILG 194

Query: 165 LILLGLMANSYQISVIIEHADHIAQ-----HPWFMPSLILVLL--GAFTKSAQFPFHFWL 217
           + L+   A +   +     A  +A        W + ++I + L  GA  KSAQFP H WL
Sbjct: 195 IGLIAAYAGTLNYTEAFAKAGTLAGITFPGTEWMLITVICICLFIGAMGKSAQFPLHVWL 254

Query: 218 PNAMAAPTPVSAYLHSATMVKAGIYLLARLSPIYASSDFWFYCLTIVGAVTALWCALLAF 277
           P++M  PTP+SA +H+ATMV AGI+++AR+SP++  SD     + ++GA+TAL+   L  
Sbjct: 255 PDSMEGPTPISALIHAATMVTAGIFMVARMSPLFELSDTALSFILVIGAITALFMGFLGI 314

Query: 278 KQTDLKLMLAYSTNVALGKLTLLLGLGTEVALTAAVLFIFAHSFYKAALFMVVGNIDKAT 337
            Q D+K ++AYST   LG +T+ LG     A + AV  +  H+F+KA LF+  G++    
Sbjct: 315 IQNDIKRVVAYSTLSQLGYMTVALGAS---AYSVAVFHLMTHAFFKALLFLGAGSV--II 369

Query: 338 GTREREK---LGNLKSVLLLSLIAAVIAALSKSGVAPMLGFLSKEYMYKSSVESGI--AW 392
           G    +    +G ++  + ++ I +++ +L+  G     GF SK+ + ++  ES +  A 
Sbjct: 370 GMHHNQDIRWMGGVRKYMPITWITSLLGSLALIGTPFFAGFYSKDSIIEAVHESHLWGAN 429

Query: 393 ISLVLLLINALMVAL-AIALLYKPFFGQATKE-----------------SESHPPKAIEQ 434
            +   +L    + A  +  + +  F G+   +                    H  K  E 
Sbjct: 430 FAYYAVLAGVFITAFYSFRMYFLVFHGKERYDQNPDAHHDDHGHGHDDHGHGHDHKPHES 489

Query: 435 KKSLWLPAMGLAIASFLLPVFALDWINQHLVIPAVMAMDPNSVPQAAKLWQGFNIPLALS 494
              +WLP + LAI S ++    ++ +         + +D        +L +GF+ P+A++
Sbjct: 490 PWVVWLPLVLLAIPSVVIGFMTIEPMLFGEFFKNAIFVDGAKHHAMKELEEGFHGPVAMA 549

Query: 495 --GIT-----LVLGGVLYLNYATLVTWLTRLVKP-LPKA 525
             G+T     L L GV       +++W   ++ P LP A
Sbjct: 550 IHGLTTAPFWLALAGV-------VLSWYMYMINPALPAA 581