Pairwise Alignments

Query, 498 a.a., Na+/H+ antiporter subunit D from Vibrio cholerae E7946 ATCC 55056

Subject, 492 a.a., NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) from Variovorax sp. SCN45

 Score =  149 bits (375), Expect = 3e-40
 Identities = 129/503 (25%), Positives = 245/503 (48%), Gaps = 40/503 (7%)

Query: 6   LTLPVVISLLTAVAIFLAGRN------RWLTNGLSVICSVINLFTGALLTITIYT---HG 56
           L+L + + +     +   GR+      RW+        +++      L+T+ ++T   +G
Sbjct: 4   LSLAIWVPIAFGAVLLAFGRDEHAKGVRWV--------ALVGAIVSFLVTVPLFTRFQNG 55

Query: 57  PASIAFGQ---WPAPFGIVFV--ADLLSVGMVMVTAIIGLVSVIYAIADLSAKPS-YARY 110
            A++ F +   W + F + +    D LS+ +V++T+ I ++ VI A   ++ + + Y   
Sbjct: 56  TAAMQFVEKTSWISRFNVNYHLGVDGLSLWLVLLTSFITVIVVISAWEVITERVNQYMGA 115

Query: 111 HALLHVLLAGVYGAFLTGDIFNLYVWFEVMLIASFGLMVLDANQQQIDGAIKYVLLNLIS 170
             +L   + GV+ A L G +F  YV+FE  LI  + ++ +     +I  A K+ L  L+ 
Sbjct: 116 FLILSGFMIGVFSA-LDGVLF--YVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLG 172

Query: 171 TLVFLLSIGLLYGATG-TLNLADLHDKAQSLAPEMKTMLAGLLLFAFSIKAALFPLFAWL 229
           +L+ L+++  LY  +G + ++   H     L    +T L      AF++K  ++P+  WL
Sbjct: 173 SLLMLVALIFLYNKSGGSFDILAWHKLP--LGSTAQTFLFFAFFAAFAVKVPMWPVHTWL 230

Query: 230 PASYHTLPSAIVALFAALLTKVGVYALLRVFTLVFPLDGSGWQPVLLGIAALTMLTGVLG 289
           P  +   P+   A+ AA++ K+G Y  LR    + P     W  +++ ++ + ++   L 
Sbjct: 231 PDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDASHEWAWLMIALSLIAVIYVGLV 290

Query: 290 AASQYDIKKILSFHIISQIGYMIMGLAIYTPLAITGAIFYVIHHILVKGNLFLIGGLIGR 349
           A  Q D+KK++++  ++ +G++ +G  I+  L ++G I  +I H  V G +FL  G++  
Sbjct: 291 ALVQQDMKKLVAYSSVAHMGFVTLGFFIFNELGVSGGIVQMIAHGFVSGAMFLGIGVLYD 350

Query: 350 KYGTTQLTQLGGVYRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKASLAAELYWL-- 407
           +  + Q+   GGV   MP      LL A +  G P  +GF G+++VI  ++ A  +W+  
Sbjct: 351 RVHSRQIADYGGVVNTMPKFAAFALLFAMANCGLPGTAGFVGEWMVILGAVKAN-FWIGL 409

Query: 408 -AAIALLVG-LLTIFSMTKIWNEVFWKDAPAALQQETLARSTLGLYALPILVLTLFSLVI 465
            AA AL+ G   T++   +++      D    L ++  AR  L L  L I VL +     
Sbjct: 410 GAATALIFGAAYTLWMYKRVYLGPVGNDHVKEL-KDINAREFLMLSLLAIAVLWM----- 463

Query: 466 GLAAQPFYQFATLAAEQLLTPTA 488
           GL  +PF      +  +LL   A
Sbjct: 464 GLYPKPFTDAMDASVTELLRHVA 486