Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., Sialic acid TRAP transporter large permease protein SiaM from Xanthobacter sp. DMC5

 Score = 66.2 bits (160), Expect = 3e-15
 Identities = 102/447 (22%), Positives = 188/447 (42%), Gaps = 51/447 (11%)

Query: 179 SEGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGL 238
           ++ M   + +     V  FIL G  +  +GV   I   + A  G + GG G + ++ S +
Sbjct: 42  AQRMIAGVESFPLLAVPFFILAGNLMNIAGVTGRIYAFAVALVGWMRGGLGQVNIIGSVI 101

Query: 239 MGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMAS 298
              +SG+++A+    G I I  MK  G+   FA GV AA++T G ++PP +    + M +
Sbjct: 102 FSGMSGTAIADAAGLGTIEIKAMKDHGYSTEFAVGVTAASATLGPIIPPSLPFVIYGMLA 161

Query: 299 YTQIP--YVDIVAVSFIPALIYFLSVAFFVR-----IEAKRMGVQIVTTSQEPFMKVLLS 351
              I   ++  V    +  L+   +VA+F        +A     Q+++ S E  + ++L+
Sbjct: 162 NVSIGALFLGGVVPGVVMTLLMMGTVAYFAHRNGWGSDAAFNWRQLLSASIE--VVIVLA 219

Query: 352 GWHNLIPLAVLVTLLVVGFTPTYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKNM 411
                 P AV V ++ VG +   A  +++  +I   W+               +  A   
Sbjct: 220 -----FPAAVYV-MIEVGLSTNQAVLIALAVLIALDWY--------------FDFSAVMA 259

Query: 412 ATTAVLLVGIGLVINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTA 471
             T V+L+G G+ +   + T       +    W+    L     +TL +L       +  
Sbjct: 260 LMTPVILIG-GMTLGWFTPTEAAVAAVI----WSLFLGLVRYRSMTLKTLAKATFDTIET 314

Query: 472 AYIVLGTLSAPALYK-LLAESQLVDLMVSGQLP-EQAKAIFMLAAPDQLSLLNAPMAAEK 529
              VL  ++A +++  LL  SQ   ++    L   Q K +F+  A   L +L      + 
Sbjct: 315 TASVLFIVTAASIFAWLLTASQAAQMLSDAILGFTQNKWVFLALA--NLLILFVGCFIDT 372

Query: 530 AHELISLVPADFVETLLQQSLGLEAIGLALLSAHLIIFWLSQDSNVTPPVCLTAFAAATI 589
              +  LVP   +   +   LG++ I   L+    ++  L     + PP+ +  F  A +
Sbjct: 373 IAAITILVP---ILLPIVLKLGIDPIHFGLIMTLNLMIGL-----LHPPLGMVLFVLARV 424

Query: 590 AKTPPMRTGFTAWKIAKGLYLVPVLIA 616
           A+    RT      +A   +LVP++IA
Sbjct: 425 ARLSVERT-----TMAILPWLVPLMIA 446



 Score = 35.0 bits (79), Expect = 8e-06
 Identities = 47/244 (19%), Positives = 102/244 (41%), Gaps = 28/244 (11%)

Query: 86  LLALLALACLIYLMLAEDALYERGVKF-----VTSDWVFSILAILIVMEMI----RRTMG 136
           ++ +LA    +Y+M+       + V       +  DW F   A++ +M  +      T+G
Sbjct: 214 VVIVLAFPAAVYVMIEVGLSTNQAVLIALAVLIALDWYFDFSAVMALMTPVILIGGMTLG 273

Query: 137 WFIPTLILICLTYVSVWGKWAGGIFHFPGLSAETLLYRSFYSSEGMFGSIAAISWSFVFM 196
           WF PT   +      +W  +  G+  +  ++ +TL   +F + E     +  ++ + +F 
Sbjct: 274 WFTPTEAAVAAV---IWSLFL-GLVRYRSMTLKTLAKATFDTIETTASVLFIVTAASIFA 329

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAV--LASGLMGSVSGSSVANTVSTG 254
           ++L  +   +         +S A  G       F+A+  L    +G    +  A T+   
Sbjct: 330 WLLTASQAAQM--------LSDAILGFTQNKWVFLALANLLILFVGCFIDTIAAITILVP 381

Query: 255 VITIPMMKKAGF-PARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFI 313
           ++ +P++ K G  P  F   +      G  L+ P +G   F++A   ++  V+   ++ +
Sbjct: 382 IL-LPIVLKLGIDPIHFGLIMTLNLMIG--LLHPPLGMVLFVLARVARLS-VERTTMAIL 437

Query: 314 PALI 317
           P L+
Sbjct: 438 PWLV 441



 Score = 25.0 bits (53), Expect = 0.009
 Identities = 13/37 (35%), Positives = 21/37 (56%)

Query: 488 LAESQLVDLMVSGQLPEQAKAIFMLAAPDQLSLLNAP 524
           +A + LV ++VSG +P+   A  M+A  +   LL  P
Sbjct: 22  MAGASLVYILVSGTVPDVVIAQRMIAGVESFPLLAVP 58