Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 450 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

 Score = 79.0 bits (193), Expect = 5e-19
 Identities = 92/359 (25%), Positives = 153/359 (42%), Gaps = 62/359 (17%)

Query: 161 FHFPGLSAETLLYRSFYSSEGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAA 220
           F + GL  ET +       + M   +   S+  +  FI  G  ++  G+ D I+  +R+ 
Sbjct: 32  FAYEGLPFETAI-------QMMVSGMNVFSFLAIPFFIFSGELMLHGGIADKIVAFARSL 84

Query: 221 AGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAAST 280
            G   GG G   V+AS L G VSGS VA+T + G + IP+MK+ G+ A +A  V   AS 
Sbjct: 85  VGHWKGGLGLANVVASTLFGGVSGSPVADTSAMGGVMIPIMKREGYSAAYAVNVTTHASL 144

Query: 281 GGQLMPPVMGAGAFIMASYTQIPYVD---IVAVSFIPALIYFLSVAFFVRI--------E 329
            G LMP       +  A+   +  +D   I  VS    +   L   F++ +        +
Sbjct: 145 SGALMPTSHNMIIYAFAAQAAVGTIDGHIIKGVSIGDLMFAGLIPVFWIMVCMLVAAYWQ 204

Query: 330 AKRMGVQIVT---TSQEPFM------KVLLSGWHNLIPLAVLVTLLVVGF-TPTYAAGL- 378
           A + G    T   T  E F       K  L+    L+ + +++  ++ G  T T AA + 
Sbjct: 205 AAKHGYPKRTDGSTMLERFPGWGMVGKTFLAAIPGLMVIVIILVCVMQGVATATEAAAIA 264

Query: 379 ---SILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGL------------ 423
              S+L  +VA        M  + + ++L + +K   TT V+L+ IG+            
Sbjct: 265 VTYSLLLTVVA-----YRTMTREKLFKSLAKASK---TTGVILLLIGVSNMLRYQMAYLE 316

Query: 424 VINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAP 482
           + + I T  +  T S  +          ML+ I +  + LG+ L + A  ++   L  P
Sbjct: 317 IPDAIETVLLAATTSPWL----------MLLYINIIQIFLGIFLDMAAHILITTPLFLP 365