Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., TRAP transporter large permease subunit from Variovorax sp. OAS795

 Score = 82.0 bits (201), Expect = 5e-20
 Identities = 70/315 (22%), Positives = 146/315 (46%), Gaps = 20/315 (6%)

Query: 179 SEGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGL 238
           ++ + G   +     V  F+L G  +   G+   I+D++ A  G V GG G++ ++A  L
Sbjct: 44  AQNLVGGADSFPLLAVPFFMLAGEIMNVGGLSRRIVDLALALVGHVKGGLGYVTIMAGCL 103

Query: 239 MGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMAS 298
           + ++SGS+VA+  +   + +PMM KAG     A G+ A+    G ++PP +G   F +A+
Sbjct: 104 LSALSGSAVADAAALTALLLPMMVKAGHNKVRAGGLIASVGVIGPVIPPSIGLVIFGVAA 163

Query: 299 YTQIPYVDIVAVSFIPALI----YFLSVAFFVRIE-----AKRMGVQIVTTSQEPFMKVL 349
              I  + + A+  +P L+     +++ A+ VR E      ++   +I+   ++      
Sbjct: 164 NVSISKLFLAAI--VPGLLIGGALWVTWAWLVRREDIVPPPRKSATEIMKAFRD------ 215

Query: 350 LSGWHNLIPLAVLVTLLVVGFTPTYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAK 409
            + W  ++P+ +LV L +  FTPT AA ++ +  +  S         P+ +       AK
Sbjct: 216 -ATWALVLPVIILVGLRMGVFTPTEAAVVAAVYALFVSTVIYRELKLPQ-LYGVFVASAK 273

Query: 410 NMATTAVLLVGIGLVINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPV 469
             A    L+    +   +I+   +      ++  + +  +L M  ++ L  + +G  + +
Sbjct: 274 TSAVVMFLIAAAMVSAWLITVANLPRMVVDLLKPFMDSPILLMAAIMLLV-MAVGTAMDM 332

Query: 470 TAAYIVLGTLSAPAL 484
           T   ++L  +  P +
Sbjct: 333 TPTILILTPVLMPVV 347