Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 425 a.a., TRAP transporter large permease from Variovorax sp. OAS795

 Score =  100 bits (250), Expect = 1e-25
 Identities = 80/310 (25%), Positives = 145/310 (46%), Gaps = 12/310 (3%)

Query: 178 SSEGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASG 237
           S + MF SI     + +  FIL G  +   G+   +++ +++  G V GG     VL   
Sbjct: 41  SVKEMFNSINKFPLAAIPFFILAGNLMETGGISRRLVEFAKSIVGGVQGGLPMTCVLTCM 100

Query: 238 LMGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMA 297
           +  +VSGSSVA T + G I IP + K G+P  +AA ++A ++  G ++PP       +  
Sbjct: 101 IFAAVSGSSVATTFAIGAILIPALIKHGYPTAYAAALQATSAELGVIIPP--SIPMILYG 158

Query: 298 SYTQIPYVDIVAVSFIPALIYFLSVAFFVRIEAKRMG-VQIVTTSQEPFMKVL-LSGWHN 355
              ++   ++    F P ++  L++  FV +  K  G  +     + PF K    +GW  
Sbjct: 159 VSAEVSIGELFIAGFGPGILISLALMLFVWVYCKWRGWGKNDGEGRMPFGKAAWQAGWAL 218

Query: 356 LIPLAVLVTLLVVGFTPTYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTA 415
           L+P+ +L  +    FTPT A+ +++   +V        ++ PK +   L +   + A   
Sbjct: 219 LMPVIILGGIYGGIFTPTEASAVAVFYALVVG-VVIYREIKPKDLYLILRKSVLSSAVIM 277

Query: 416 VLLVGIGLVINVISTTGIGNTFSLMINNWANGDLLT---MLVLITLASLVLGMGLPVTAA 472
            ++   GL   +I+  G+ +     I +W    L +    L+ +  A  ++GM +  +AA
Sbjct: 278 FIIANAGLFAFLITRAGVPDA----IGHWLQEVLKSPAMFLLGVNAALFIIGMFIETSAA 333

Query: 473 YIVLGTLSAP 482
            IVL  + AP
Sbjct: 334 IIVLAPILAP 343