Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score = 74.3 bits (181), Expect = 1e-17
 Identities = 59/296 (19%), Positives = 136/296 (45%), Gaps = 16/296 (5%)

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           F+L GA +   G+   ++  +    G V GG   + ++AS   G++SGSSVA+T S G +
Sbjct: 61  FVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTASVGSV 120

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
            IP M++ G+P  F+  V  + S    L PP   +  + +A+   +    +     +P L
Sbjct: 121 LIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGIMPGL 180

Query: 317 IYFLSVAFFVRIEAKRMGV---QIVTTSQEPFMKVLLSGWHNLIPLAVLVTLLVVG-FTP 372
           +    +     I AK+      +++   +   +K+       L+ + +++  ++ G FT 
Sbjct: 181 LLSAVMMGLCLIFAKKRNYPKGEVIPLREA--LKIAGEALWGLMAMVIILGGILSGVFTA 238

Query: 373 TYAAGLSIL-SVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLL---VGIGLVINVI 428
           T +A ++++ S  V  +  +++K   + + + + +  + ++   +L+      G V+ ++
Sbjct: 239 TESAAVAVVWSFFVTMFIYRDYKW--RDLPKLMHRTVRTISIVMILIGFAASFGYVMTLM 296

Query: 429 STTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAPAL 484
                  T  L +++    +   +L+ I    ++LG  + +    ++L  +  P +
Sbjct: 297 QIPSKITTAFLTLSD----NRYVILMCINFMLMLLGTVMDMAPLILILTPILLPVI 348