Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP transporter large permease from Pseudomonas fluorescens SBW25

 Score = 85.1 bits (209), Expect = 6e-21
 Identities = 72/351 (20%), Positives = 157/351 (44%), Gaps = 22/351 (6%)

Query: 184 GSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVS 243
           G +   S   +  F+L GA +   G+   ++  +    G V GG   + ++AS   G++S
Sbjct: 48  GGVNKFSLMAIPFFVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAIS 107

Query: 244 GSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIP 303
           GSSVA+T S G + IP M++ G+P  FA  V  + S    L PP   +  + +A+   + 
Sbjct: 108 GSSVADTASVGSVLIPEMERRGYPREFATAVTVSGSVQALLTPPSHNSVLYSLAAGGTVS 167

Query: 304 YVDIVAVSFIPALIYFLSVAFFVRIEAKRMGV---QIVTTSQEPFMKVLLSGWHNLIPLA 360
              +     +P L+    +     I AK+       ++   Q   +K+       L+ + 
Sbjct: 168 IASLFMAGVVPGLLMSACLMVLCLIFAKKRNYPKGDVIPLKQA--LKIAADALWGLMAMV 225

Query: 361 VLVTLLVVG-FTPTYAAGLSIL-SVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLL 418
           +++  ++ G FT T +A +++L +  V  +  +++K   + + + + +  + ++   +L+
Sbjct: 226 IILGGILSGIFTATESAAIAVLWAFFVTMFIYRDYKW--RELPKLMHRTVRTISIVMILI 283

Query: 419 ---VGIGLVINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIV 475
                 G ++ ++       T  L +++    +   +L+ I +  L+LG  + +    ++
Sbjct: 284 AFAASFGYIMTLMQIPAKITTMFLTLSD----NRYVILMCINVMLLLLGTVMDMAPLILI 339

Query: 476 LGTLSAPALYKLLAES------QLVDLMVSGQLPEQAKAIFMLAAPDQLSL 520
           L  +  P +  L  +        LV+L +    P     +F+ AA  ++S+
Sbjct: 340 LTPILLPVVLGLGVDPVHFGMIMLVNLGIGLITPPVGAVLFVGAAVGKVSI 390