Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 74.7 bits (182), Expect = 9e-18
 Identities = 71/280 (25%), Positives = 126/280 (45%), Gaps = 21/280 (7%)

Query: 196 MFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGV 255
           +F+L G  +  +G+   +   ++A  GK  GG     V+A G  G++ GSSVA   + G 
Sbjct: 64  LFVLMGNLVAGAGISGDLFRAAQAFIGKRRGGLAMATVVACGGFGAICGSSVATAATMGK 123

Query: 256 ITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPA 315
           + IP M+K G+    ++   AA  T G L+PP +    + +A+ T I    + A   +P 
Sbjct: 124 VAIPSMRKLGYGDSLSSAAVAAGGTLGILIPPSVIMVVYGVATQTHIGM--LFAAGIVPG 181

Query: 316 LI----YFLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGWHNLIPLAVLVTLLVVG-- 369
           LI    Y  +V + V    ++  +  +    E   K+ L     L P+A++  +++ G  
Sbjct: 182 LIAIGGYMAAVKWSV---WRKPELAPLAEDNEQVNKLAL--LRALWPVALIFGVVMGGIY 236

Query: 370 ---FTPTYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVIN 426
              FT   A+G+   + +V  +   +H +  K I   L   A+  A    +++G  L   
Sbjct: 237 GGFFTSVEASGIGAAAALV--FALTHHSLKLKDIYAILVDTARTSAMMFAIVLGAALFGE 294

Query: 427 VISTTGIGNTFSLMINNWA---NGDLLTMLVLITLASLVL 463
            ++ TG+      ++        G +L M+VL  L   VL
Sbjct: 295 FVNLTGVHEGLLQVVKASGLPPFGIILLMIVLYILLGTVL 334



 Score = 29.3 bits (64), Expect = 4e-04
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 8/133 (6%)

Query: 187 AAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSS 246
           +A+ ++ V    LFG F+  +GV + ++ V + A+G    G   + ++   L+G+V   S
Sbjct: 279 SAMMFAIVLGAALFGEFVNLTGVHEGLLQVVK-ASGLPPFGIILLMIVLYILLGTVL-ES 336

Query: 247 VANTVSTGVITIPMMKKAGF-PARFAAGVEAAASTGGQLMPPVMGAGAFIMAS-YTQIPY 304
           ++  + T  I  P++   G+ P  F   V      G  L+ P +G   F++ S    IP 
Sbjct: 337 LSMILLTVPIFFPIILALGYDPVWFGILVVMVVEIG--LITPPIGVNLFVIRSVMPDIPM 394

Query: 305 VDIV--AVSFIPA 315
           + +V   + FI A
Sbjct: 395 MTVVRGVIPFIVA 407