Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 430 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  100 bits (249), Expect = 1e-25
 Identities = 78/315 (24%), Positives = 152/315 (48%), Gaps = 16/315 (5%)

Query: 179 SEGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGL 238
           ++ M   I +     V  FIL G  +   G+   I+D+++A  G V GG G++A+ A+ L
Sbjct: 49  AQNMVAGIDSFPLLAVPFFILAGELMNSGGISKRIIDMAQAWVGHVRGGLGYVAIGAAVL 108

Query: 239 MGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMAS 298
           + ++SGS++A+  +   I +PMM+K G+P   +AG+ AA S  G ++PP M   AF++  
Sbjct: 109 LSAMSGSALADAAAMSAILLPMMRKHGYPVASSAGLIAAGSVIGPIIPPSM---AFVIYG 165

Query: 299 YTQIPYVDIVAVS-FIPALIYFLSVAFFVRIEAKRMGVQIVTTSQEPF---MKVLLSG-- 352
            T    +  + +S  +P L+  +++    R+  ++M      TS  P     ++ L+G  
Sbjct: 166 VTTNTSISALFISGIVPGLVMGVALVVAWRVVLRKM----TLTSSPPVPMAERLRLTGRA 221

Query: 353 -WHNLIPLAVLVTLLVVGFTPTYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKNM 411
            W  ++P+ ++  +    FTPT AA ++    +V + F       P+ +  AL + A   
Sbjct: 222 VWALVMPVIIIGGMKSGIFTPTEAAVVAAFYALVIALFVHREMRLPE-LYSALVRAASTT 280

Query: 412 ATTAVLLVGIGLVINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTA 471
           +    L  G  +   +I+   + +T +  +        + M+V++ L  + +G  L +T 
Sbjct: 281 SVVMFLCAGAAVASYMITLADLPSTLTGWLGPLVEHPRVLMVVMM-LVLVAIGTALDLTP 339

Query: 472 AYIVLGTLSAPALYK 486
             ++   +  P   K
Sbjct: 340 TILIFAPVMLPIAVK 354