Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 427 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 85.5 bits (210), Expect = 5e-21
 Identities = 66/287 (22%), Positives = 137/287 (47%), Gaps = 4/287 (1%)

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           F+L G  +   G+   I++ + A  G V GG G++ ++A+ L+ ++SGS+VA+  +   +
Sbjct: 62  FMLAGEIMNTGGLSRRIVNFAMALVGHVRGGLGYVTIVAACLLSALSGSAVADAAALTAL 121

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
            +PMM KAG     + G+ AA    G ++PP +G   F +A+   I  + +  +     L
Sbjct: 122 LLPMMVKAGHDKARSGGLIAACGVIGPIIPPSIGFVIFGVAANVSISKLFLAGIFPGILL 181

Query: 317 IYFLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGWHNLIPLAVLVTLLVVGFTPTYAA 376
              L   ++     +++      +++E    +  +GW  ++PL +LV L +  FTPT AA
Sbjct: 182 AAGLWATWWWTTRREKLEPPPRKSAREVIAAMRSAGWALMLPLIILVGLRMGVFTPTEAA 241

Query: 377 GL-SILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVGIGLVINVISTTGIGN 435
            + ++ ++ VA    +  ++  K + E     AK  A    L+    +   +I+   + +
Sbjct: 242 VVAAVYALFVAGVIYR--ELTVKQLYEVFLNAAKTTAVIMFLVAAAMVSAWLITVAQLPD 299

Query: 436 TFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAP 482
               ++    +  +L M  ++ L  + +G  + +T   ++L  +  P
Sbjct: 300 QIVALLQPLLDSPMLLMFAIMLLV-IAVGTAMDMTPTILILTPVLMP 345