Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 860 a.a., TRAP-type uncharacterized transport system, fused permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  211 bits (538), Expect = 9e-59
 Identities = 191/729 (26%), Positives = 330/729 (45%), Gaps = 86/729 (11%)

Query: 4   SVEQELEKFEVPTRTRFGWVTRTISVLCVLLSLAHIWFNT-------LSTWSELWISAIH 56
           +++Q +   +   R   G     +  +C+L +L   W+ +       +   ++    AIH
Sbjct: 11  ALQQLVADSDTGGRKPTGVTAGVVFSVCLLWALFQYWYASPLPFELGIGILNDTEARAIH 70

Query: 57  FAGFAMICALWYPALPRWRGSKVALAFDVLLALLALACLIYLMLAEDALYERGVKFVTSD 116
            A    +  L +PA  R    +V +  D LLA +A  C  Y+ML    L  R  +    D
Sbjct: 71  LAFALFLAFLAWPAFKRSPRHRVPV-IDWLLAGVAAFCGAYIMLFYADLATRPGQPNGLD 129

Query: 117 WVFSILAILIVMEMIRRTMGWFIPTLILICLTYVSVWGKWAGGIFHFPGLSAETLLYRSF 176
                  +++++E  RR +GW +  L ++ L Y  + G     +    G S   L+   +
Sbjct: 130 IAVGFAGVVLLLEATRRAVGWPMAALAVVFLAYCLL-GPHLPEVLSHKGASVNRLISHMW 188

Query: 177 YSSEGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLAS 236
            ++EG++G    +S   +F+++LFGA L R+G G+Y+M VS AA G + GGP  +AV++S
Sbjct: 189 LTTEGVYGIALGVSAGTIFVYVLFGALLDRAGGGNYMMQVSFAALGHLRGGPAKVAVVSS 248

Query: 237 GLMGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIM 296
            L G +SGSSV+N VS G+ TIP+MKKAG+    A  +E  +S  GQ+MPPVMGA AF+M
Sbjct: 249 ALNGMISGSSVSNVVSGGIFTIPLMKKAGYGGVKAGAIETMSSVNGQIMPPVMGAAAFLM 308

Query: 297 ASYTQIPYVDIVAVSFIPALIYFLSVAFFVRIEAKRMGVQ-IVTTSQEPFMKVLLSGWHN 355
             Y  IPY DIV  +F+PA + ++ + + V +EA ++G+Q IV     P+   LL    N
Sbjct: 309 VEYVGIPYADIVKHAFLPATLSYIGLLYIVHLEALKLGMQPIVQAVARPWRVRLL---RN 365

Query: 356 LIPLAVLVTLL------------VVGFTPTYAAGLSILSVIVASWFSKN----------- 392
            I +A  + ++            V+G    YAA   +L + + S +              
Sbjct: 366 AIGIAGSIAVVCSVYYLLQGIKAVMGPVAPYAASAVVLGLYLFSVYQAAGCPDLPDDIDI 425

Query: 393 ----------------HKMGPKAI------IEALEQGAKNMATTAVLLVGI----GLVIN 426
                           H + P A+      +E +           VL+V +     L+  
Sbjct: 426 DHPRPLQTWPTVRAGLHYLMPIAVLIWCLMVEEMSPALSAFWAVTVLIVLMLTQRPLIAL 485

Query: 427 VISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAPALYK 486
              T+G G         W  G    +      +  ++G+G+    A I++G ++   L  
Sbjct: 486 FRRTSGAG--------TWLQGWRSVVDGFNDGSRNMIGIGVATATAGIIVGAITLTGLG- 536

Query: 487 LLAESQLVDLMVSGQLPEQAKAIFMLAAPDQLSLLNAPMAAEKAHELISLVPADFVETLL 546
            L  ++ V+ +  G +      +  +A    +  L  P  A   + L++ + A  V  L 
Sbjct: 537 -LRMTEFVEFVAQGNV---MMMLLFIAFVCLVLGLGVPTTAN--YVLVATLMAPVVVELG 590

Query: 547 QQSLGLEAIGLALLSAHLIIFWLSQDSNVTPPVCLTAFAAATIAKTPPMRTGFTAWKIAK 606
            QS     + + L++ HL +F+     ++TPPV L  FAAA I+    ++TG      A 
Sbjct: 591 AQS----GLIIPLVAVHLFVFYYGIMGDITPPVGLATFAAAAISGEDAIQTGVQGAIYAL 646

Query: 607 GLYLVP-VLIAYTQLISWDVAT---VVTIGIFAIFGTYAMIGAIEGYLEGRLNLLWRLLL 662
              ++P + I   QL+  +V +   ++ + +     T     A   +   + +  W  +L
Sbjct: 647 RTVILPFIWIFNPQLLLINVHSTPELIRLLLACTLATLLFAAATMNWFRVK-SRWWETVL 705

Query: 663 AVIGVLLVW 671
            ++ VLL++
Sbjct: 706 LLLAVLLLF 714