Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 426 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 88.2 bits (217), Expect = 7e-22
 Identities = 74/316 (23%), Positives = 154/316 (48%), Gaps = 22/316 (6%)

Query: 179 SEGMFGSIAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGL 238
           ++ + G   +     V  F+L G  +   G+   I++++    G V GG G++ ++A  L
Sbjct: 44  AQNLIGGADSFPLLAVPFFMLAGEIMNVGGLSRRIVNLALTVVGHVRGGLGYVTIMAGCL 103

Query: 239 MGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMAS 298
           + ++SGS+VA+  +   + +PMM KAG     A G+ AA    G ++PP +G   F +A+
Sbjct: 104 LSALSGSAVADAAALTALLLPMMTKAGHDRARAGGLIAATGVIGPVIPPSIGLVIFGVAA 163

Query: 299 YTQIPYVDIVAVSFIPALI----YFLSVAFFVRIEA-----KRMGVQIVTTSQEPFMKVL 349
              I  + + A+  +P L+     +++ A+ VR E      ++ G +I+  +++      
Sbjct: 164 NVSISKLFMAAI--VPGLLIGGALWVTWAWLVRRETIQPPPRKSGKEILKAARD------ 215

Query: 350 LSGWHNLIPLAVLVTLLVVGFTPTYAAGL-SILSVIVASWFSKNHKMGPKAIIEALEQGA 408
            + W  ++P+ +LV L +  FTPT AA + ++ ++ VA+   +  ++  K + E     A
Sbjct: 216 -AVWALVLPIIILVGLRMGIFTPTEAAVVAAVYALFVATVVYR--ELSFKQLHEVFVVAA 272

Query: 409 KNMATTAVLLVGIGLVINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLP 468
           K  A    L+    +   +I+   + +    M+  +    +L M  ++ L  +V+G  + 
Sbjct: 273 KTSAIVMFLIAAAMVSAWLITVADLPSKVVDMLQPFMGNPILLMAAIMLLV-MVVGTAMD 331

Query: 469 VTAAYIVLGTLSAPAL 484
           +T   ++L  +  P +
Sbjct: 332 MTPTILILTPVLMPVV 347