Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 6 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 73.2 bits (178), Expect = 3e-17
 Identities = 73/304 (24%), Positives = 131/304 (43%), Gaps = 19/304 (6%)

Query: 191 WSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANT 250
           WS  F F + GA L R  + + +++      G V GG  F  VL   ++G+++G+  A+ 
Sbjct: 68  WSIPF-FTMMGAVLERCRLAEDLLEGVGKLFGAVPGGVAFAVVLVGAVLGAITGTVAASV 126

Query: 251 VSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPP--VMGAGAFIMASYTQIPYVDIV 308
           V+ GVI++P+M + G+  R A GV AA+ T  QL+PP  V+   A  +       Y+  +
Sbjct: 127 VAMGVISLPVMMRYGYNMRLATGVIAASGTITQLIPPSLVLIVLADQLGRSVGDMYLGAI 186

Query: 309 AVSFIPALIYFLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGWHNLIPLA-----VLV 363
             S +   ++ L +A         M          P  K++      ++P A     VL 
Sbjct: 187 GPSILQVGVFLLFIAVVAIFRPHHMPPLPAEVRSGPKWKLVGQVLMGMLPAAGLMFLVLG 246

Query: 364 TLLVVGFTPTYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKN--MATTAVLLVGI 421
           T+L    TPT +  +  +  ++ +  ++      +  ++ L    K+    TT V+ + +
Sbjct: 247 TILAGWATPTESGAMGAVGAMLLAALNR------RLTLDTLWSACKSTMRITTMVIFILM 300

Query: 422 GLVINVISTTGI--GNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTL 479
           G  I  +   G+  G+    ++ +   G     L+ +     VL   L       +L  L
Sbjct: 301 GSTIFTLVFHGMDGGHWVEHLLTSLPGGQ-TGFLLFVAAFIFVLAFFLDFFEIAFILIPL 359

Query: 480 SAPA 483
            APA
Sbjct: 360 LAPA 363