Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 73.2 bits (178), Expect = 3e-17
 Identities = 76/307 (24%), Positives = 130/307 (42%), Gaps = 31/307 (10%)

Query: 196 MFILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGV 255
           MFIL GAF   SG+   +    RA  G   GG    ++ A G   +++GSSVA   +   
Sbjct: 73  MFILMGAFASHSGMSTELFKAGRAWLGHRRGGLALASIAACGGFSAINGSSVATAATMTQ 132

Query: 256 ITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPA 315
           + +P M++AG+   F+AG+ AA  T G ++PP     + IM  Y  +   DI  +     
Sbjct: 133 VALPEMRRAGYHPGFSAGLIAAGGTLGIMIPP-----SVIMVLYGIMTETDITKLFAAGI 187

Query: 316 LIYFLSVAFFVRIEAKRMGVQIVTTSQEPFMKVLLSGW----HNLIPLAVLVTLLVVG-- 369
           +  F+++ F+  + A      +     +   +    GW     +L PL  +V L V    
Sbjct: 188 IPGFMAIGFYSVVVA-----VVARLRPDTMPRGERLGWGERFASLRPLWAVVVLFVFVLG 242

Query: 370 ------FTPTYAAGLSILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLLVG--- 420
                 FT   AAG+  +  +         ++G K I  AL    +  +   +++VG   
Sbjct: 243 GIYGGLFTVQEAAGVGAIGTLAIGML--RGRLGWKQIKAALIGALRVSSAIMMIVVGAYL 300

Query: 421 IGLVINVISTTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLS 480
            G  + +   T     F + +     G    +L LI +  L+LG  +   A  ++   + 
Sbjct: 301 FGYFLTITQFTQNAVEFLVHLPVGPYG----VLALIMVGYLILGAVMDELAMILLTVPIV 356

Query: 481 APALYKL 487
            PA+ +L
Sbjct: 357 FPAMMQL 363



 Score = 33.1 bits (74), Expect = 3e-05
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 16/122 (13%)

Query: 186 IAAISWSFVFMFILFGAFLVRSGVGDYIMDVSRAAAGKV-------VGGPGFIAVLASG- 237
           I A+  S   M I+ GA+L       Y + +++     V       VG  G +A++  G 
Sbjct: 282 IGALRVSSAIMMIVVGAYLF-----GYFLTITQFTQNAVEFLVHLPVGPYGVLALIMVGY 336

Query: 238 -LMGSVSGSSVANTVSTGVITIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIM 296
            ++G+V    +A  + T  I  P M + GF   +   +   A T G + PPV G   F++
Sbjct: 337 LILGAVM-DELAMILLTVPIVFPAMMQLGFDPVWFGVIVVMAVTFGMICPPV-GMNVFVI 394

Query: 297 AS 298
            S
Sbjct: 395 NS 396