Pairwise Alignments

Query, 713 a.a., C4-dicarboxylate ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 428 a.a., TRAP transporter large permease from Pantoea agglomerans CFBP13505 P0401

 Score = 75.9 bits (185), Expect = 4e-18
 Identities = 70/295 (23%), Positives = 134/295 (45%), Gaps = 18/295 (6%)

Query: 197 FILFGAFLVRSGVGDYIMDVSRAAAGKVVGGPGFIAVLASGLMGSVSGSSVANTVSTGVI 256
           FIL GA +   G+   +++ +    G + GG   + ++AS   G++SGSSVA+T S G +
Sbjct: 61  FILAGAIMAEGGIARRLVNFAYIFVGFIRGGLSLVNIVASTFFGAISGSSVADTASIGSV 120

Query: 257 TIPMMKKAGFPARFAAGVEAAASTGGQLMPPVMGAGAFIMASYTQIPYVDIVAVSFIPAL 316
            IP M++ G+P  FAA V A+ S    L PP   +  + +A+   +    +     +P L
Sbjct: 121 MIPQMEEKGYPRDFAAAVTASGSVQAVLTPPSHNSVIYSLATGGLVTISSLFVAGILPGL 180

Query: 317 IYFLSVAFFVRIEAKRMGVQIVTTSQEPF---MKVLLSGWHNLIPLAVLVTLLVVG-FTP 372
           +    +       A + G       + PF   +K+    +  L  + +++  ++ G FT 
Sbjct: 181 MLGGCLMVMCLGFAHKRGYP--KGERIPFRQALKIFFDAFWGLFTVVIIMGGILSGIFTA 238

Query: 373 TYAAGLS-ILSVIVASWFSKNHKMGPKAIIEALEQGAKNMATTAVLL---VGIGLVINVI 428
           + +A ++ I +  V  +  ++ K     I+  L +  K +    VL+    G G V+  +
Sbjct: 239 SESAAIACIWAFFVTMFIYRDFKWNQLHIL--LFRTIKTVTIVMVLIAFAAGFGAVMTFM 296

Query: 429 S-TTGIGNTFSLMINNWANGDLLTMLVLITLASLVLGMGLPVTAAYIVLGTLSAP 482
              T I   F+ + +N        +L+ I +  LV+G  + +    ++L  +  P
Sbjct: 297 QLPTIITEAFTSLSDN-----KYVILMCINILLLVVGTLMDMAPLILILTPVLLP 346



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 356 LIPLAVLVTLLVVGFTPTYAAGLSILSVIVASWF 389
           LI L  L+ LL+VGF   +A G   LS  + +W+
Sbjct: 4   LILLGSLLVLLLVGFPVAFAVG---LSAFIGAWW 34