Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 480 a.a., DNA-binding transcriptional regulator NtrC from Xanthobacter sp. DMC5

 Score =  265 bits (677), Expect = 2e-75
 Identities = 168/474 (35%), Positives = 247/474 (52%), Gaps = 43/474 (9%)

Query: 1   MESQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDT 60
           M S  I + +DD  +R    Q L  AG++V    + A+    + Q     V++DV +PD 
Sbjct: 1   MPSGSILVADDDAAIRTVLNQALSRAGYEVRSCGNAATLWRWVSQGDGDLVITDVVMPDE 60

Query: 61  DGLSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120
           +   LL  +K  +  +PVI+++       A++A  +GA++++ KPF  + L + V +A++
Sbjct: 61  NAFDLLPRIKKARPDLPVIVMSAQNTFMTAIRASERGAYEYLPKPFDLKELISIVGRALA 120

Query: 121 QYQNALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKE 180
           +       +   H+ A  +     L+G+  ++Q +   +A++   D  V+I GE+G GKE
Sbjct: 121 E-----PKKGDGHHHAPEEQDNIPLVGRSPAMQEIYRLLARLMQTDLTVMIAGESGTGKE 175

Query: 181 LVAQCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGT 240
           LVA+ LH   +R+ G FVAIN  AIP +L ESELFGHE G+FTGA  R  G+ E A+ GT
Sbjct: 176 LVARALHDYGKRRTGPFVAINMAAIPRDLIESELFGHEKGSFTGATTRNPGRFEQAEGGT 235

Query: 241 LFLDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELR---QHAEFRQ 297
           LFLDEI  MP+  Q ++LRVLQ      VG   PI  D+R+IAA  ++LR   Q   FR+
Sbjct: 236 LFLDEIGDMPMEAQTRLLRVLQQGEYTTVGGRTPIKTDVRIIAATNKDLRTLIQQGLFRE 295

Query: 298 DLFYRLNVAQLYLPPLRERGDDILLLFEHFCVQVKPTWRSLSEADRLA---LLTYRWPGN 354
           DLF+RLNV  L LPPLRER +D+  L  HF +Q +       + D  A   L  YRWPGN
Sbjct: 296 DLFFRLNVVPLRLPPLRERSEDVPDLVRHFFLQAEREGLPAKQIDSAALDRLKRYRWPGN 355

Query: 355 VRELRNVALRYA-------LDDSISVGEILASCPGMTEEEASAGLPLAIQVH-------- 399
           VREL N+  R A       +  +I   E+    P M  EE      LA  V         
Sbjct: 356 VRELENLVRRLAALYPQEVITPAIIEAELSEPMPNMLSEEGPVDATLAASVERHLNTYFS 415

Query: 400 -----------------NFERKVIAQALHRHQGNISEVMKELDLPRRTLNQKMQ 436
                            + E  +++ AL   +GN  +  + L L R TL +K++
Sbjct: 416 GFGENLPPPGLYHRILKDVEYPLLSAALAATRGNQIKAAELLGLNRNTLRKKIR 469