Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., Regulatory protein AtoC from Xanthobacter sp. DMC5

 Score =  266 bits (681), Expect = 8e-76
 Identities = 171/449 (38%), Positives = 254/449 (56%), Gaps = 20/449 (4%)

Query: 8   LIEDDDIVRQATGQWLQLA----GFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGL 63
           LI DD++     G+ L+ A    GF+       A ALA    Q    V+SD+R+PD  G 
Sbjct: 9   LIVDDEVRH---GEVLEAALAERGFEAVSTNTVAKALAYCASQPVDLVLSDLRMPDRGGA 65

Query: 64  SLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQ 123
            LL ALK+ Q  +PVI++T +  V  AV  +  GAFD++ KP   + +  T+A+A+ + +
Sbjct: 66  DLLRALKHEQPELPVIIMTAYASVRGAVDLVKDGAFDYVAKPLDLDDVVATIARAL-RLK 124

Query: 124 NALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVA 183
              S  SR       +     L+G+      +  Q+ +VA    +V++ GE+G GKELVA
Sbjct: 125 AVESENSRLRSELEERYRFDNLLGESAVFHHVLRQVTEVAPSRASVLLLGESGTGKELVA 184

Query: 184 QCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFL 243
           + +H  S R+   FVA+NC AIPE L ESELFGH  GAFTGA   R G+   A++GTLFL
Sbjct: 185 RAIHYNSPRRDLPFVAVNCAAIPETLIESELFGHVKGAFTGATGVREGRFAAANQGTLFL 244

Query: 244 DEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQH---AEFRQDLF 300
           DEI  MPL +Q KVLR LQ+   E VGS++ +++D+R+IAA  ++L++      FR DL+
Sbjct: 245 DEIADMPLPVQAKVLRALQEQSFEPVGSSKSVSVDVRIIAATHKDLQKEIAAGTFRMDLY 304

Query: 301 YRLNVAQLYLPPLRERGDDILLLFEHFCV----QVKPTWRSLSEADRLALLTYRWPGNVR 356
           YRL V  + LPPLRER DDI+LL +HF       +    + L+   +  L  YRWPGNVR
Sbjct: 305 YRLAVFPITLPPLRERTDDIVLLADHFLAAATRDMGKRVKGLTPEAQAMLTRYRWPGNVR 364

Query: 357 ELRNVALRYAL---DDSISVGEILA-SCPGMTEEEA-SAGLPLAIQVHNFERKVIAQALH 411
           EL+N   R A+    D +  G++L     G T+ ++ +    L  ++   ER+ + QAL 
Sbjct: 365 ELQNCMERAAIVARGDLVGPGDLLLFEANGDTDVQSHTLNGDLDSELSRIEREFVLQALK 424

Query: 412 RHQGNISEVMKELDLPRRTLNQKMQKFGL 440
              G  +   ++L +  R+L  +++K  +
Sbjct: 425 DSGGVQARAAEKLGITERSLWHRIKKLAI 453