Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Xanthobacter sp. DMC5

 Score =  313 bits (802), Expect = 7e-90
 Identities = 180/450 (40%), Positives = 268/450 (59%), Gaps = 14/450 (3%)

Query: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65
           +A I+DD ++R A  Q L LAG  VA +     AL  I+      VV+DVR+P  DGL L
Sbjct: 8   VAFIDDDAVLRAANVQALMLAGLTVAGYGSAMEALEVIDADFPGVVVTDVRMPRIDGLEL 67

Query: 66  LVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNA 125
              LK   + +PVIL+TGHGD+ MAV A+ +GA+DF+ KP+  ERL  ++  A+ + +  
Sbjct: 68  FRRLKARDADLPVILVTGHGDIAMAVDAMREGAYDFLAKPYASERLVASIRHALDRRRLV 127

Query: 126 LSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQC 185
           L ++     +A+ +  +  L+G    +  LR+ + ++A  D +V++ GETG GKE+VA  
Sbjct: 128 LENRELKRAVATTQD-DLPLLGTSAVMARLRQMLRQIADADVDVLVEGETGSGKEVVATA 186

Query: 186 LHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDE 245
           LH+ S R     VA+NCGA+PE + ESELFG+EAGAFTGAVK+R+G++E A  GTLFLDE
Sbjct: 187 LHRWSRRAARPLVAVNCGALPETVIESELFGYEAGAFTGAVKKRVGRIEHAHGGTLFLDE 246

Query: 246 IESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELR---QHAEFRQDLFYR 302
           IE+M  A+QVK+LRVL+   +  +G+N+   +D+RV+AA+K +L    +   FR+DL+YR
Sbjct: 247 IEAMSPALQVKLLRVLEAREIAPLGTNETRRVDIRVVAASKVDLPALVKQGSFREDLYYR 306

Query: 303 LNVAQLYLPPLRERGDDILLLFEHFCVQVKPTWR----SLSEADRLALLTYRWPGNVREL 358
           L+VA + +P LRER  D+ LLF HF  +    +      L       L  + WPGNVREL
Sbjct: 307 LHVAAVRIPALRERRGDVPLLFGHFLARAAERFNRPPPELDAGVLRHLAEHDWPGNVREL 366

Query: 359 RNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNIS 418
            + A R AL      G +    P    E       L  +V  FE + I  AL  ++G++ 
Sbjct: 367 VHYAERVAL------GLVEPEQPSAPAEAGGGKGTLPERVDAFEAQEIRAALEANKGDVQ 420

Query: 419 EVMKELDLPRRTLNQKMQKFGLLRGDFTAQ 448
             +  L +PR+T   K+++ G+ +  + A+
Sbjct: 421 ATVAALGIPRKTFYDKLRRHGIDQAAYRAE 450