Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., C4-dicarboxylate transport transcriptional regulatory protein DctD from Xanthobacter sp. DMC5

 Score =  375 bits (963), Expect = e-108
 Identities = 212/447 (47%), Positives = 289/447 (64%), Gaps = 17/447 (3%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           R+ L++D++++R +  Q L LAG DVA FA   +AL AI +     VV+DVRLP  DGL 
Sbjct: 21  RVLLVDDEEMIRLSIEQTLDLAGIDVASFASAEAALPAIGRDYPGIVVTDVRLPARDGLE 80

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           LL  ++     +PV+LITGHGDV MAV A+ +GA+DFIEKPF  +     V +A+ +   
Sbjct: 81  LLADIRRRDPELPVVLITGHGDVAMAVSAMREGAYDFIEKPFVSDAFVEVVKRALEKRAL 140

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
            L ++     L     +E+ L+GQ  +++ LR+ +A++A+   +V++ GETG GKE VA+
Sbjct: 141 VLENRRLRTALDRGDAIERHLVGQSAAMRRLRDDVAQLASTSADVLVLGETGAGKEQVAR 200

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            LH+   R+   FVA+NCGAIPE++FESE+FGHEAGAFTGA KRRIGK+E A  GTLFLD
Sbjct: 201 ALHEGGVRRDKPFVAVNCGAIPESMFESEMFGHEAGAFTGAGKRRIGKIEHASGGTLFLD 260

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---FRQDLFY 301
           E+ESMPLAMQVK+LRVLQD  +ER+GSN P+ +DLRVIAA KE+L   A+   FR+DLF+
Sbjct: 261 EVESMPLAMQVKLLRVLQDRRIERLGSNTPVPVDLRVIAATKEDLGALADAGRFRKDLFF 320

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHFCVQVKPTWR----SLSEADRLALLTYRWPGNVRE 357
           RL+V +L LPPLRER +DI LLFE F VQ    ++     +  + R AL+   WPGNVRE
Sbjct: 321 RLDVVKLVLPPLRERREDIPLLFELFLVQAAVKYQRPVVEVPPSLRRALMLADWPGNVRE 380

Query: 358 LRNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNI 417
           L+N A R+ L      G +     G     A+A   L   +   ER VI  AL      +
Sbjct: 381 LKNAAERHML------GFLAPDFTG----GAAAAPSLNELLDRVERLVIEDALKASGNRV 430

Query: 418 SEVMKELDLPRRTLNQKMQKFGLLRGD 444
           S     L++PR+TL+ +M++ GL   D
Sbjct: 431 SAAALALNIPRKTLHDRMKRLGLTTTD 457