Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 441 a.a., C4-dicarboxylate ABC transporter from Pseudomonas simiae WCS417

 Score =  399 bits (1024), Expect = e-115
 Identities = 223/448 (49%), Positives = 294/448 (65%), Gaps = 20/448 (4%)

Query: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65
           + +++D+  +R A  QWL L+GF+V +F+     LA + +     ++SDVR+P   GL L
Sbjct: 5   VIVVDDEASIRTAVEQWLSLSGFEVQLFSRAEECLAQLPKDFPGVILSDVRMPGLSGLEL 64

Query: 66  LVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNA 125
           L  ++   + +PVIL+TGHGDV MAV+A+  GA+DF+EKPF P+ L N++ +A+ + +  
Sbjct: 65  LAEVQRRDADLPVILLTGHGDVPMAVEAMRDGAYDFLEKPFSPDALLNSLRRALDK-RGL 123

Query: 126 LSSQSRAHYLASAKG-LEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
           +    R H  A  +  LE  L+G  + +Q LR Q+  +A++  NV+I GETG GKELVA+
Sbjct: 124 ILENRRLHQQADHRAQLESTLLGVSRGLQTLRRQVLDLASLPVNVLIRGETGSGKELVAR 183

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
           CLH    R +  FVA+NC AIPE LFE+ELFGHE+GAFTGA  +RIGKLE A  GTLFLD
Sbjct: 184 CLHDFGPRAKKPFVALNCAAIPEQLFEAELFGHESGAFTGAQGKRIGKLEYAHGGTLFLD 243

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHA---EFRQDLFY 301
           EIESMPLA QVK+LRVLQ+  +ER+GSNQ I +DLR+IAA K +L + A    FR+DL Y
Sbjct: 244 EIESMPLAQQVKLLRVLQEQKLERLGSNQSIHVDLRIIAATKPDLLEEARAGRFREDLAY 303

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHF----CVQVKPTWRSLSEADRLALLTYRWPGNVRE 357
           RLNVAQL LPPLRER +DI LLF+HF      ++  +   LS A    LL++ WPGNVRE
Sbjct: 304 RLNVAQLRLPPLRERREDIPLLFDHFAQSAAERLGRSVEPLSGAQLGRLLSHDWPGNVRE 363

Query: 358 LRNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNI 417
           L NVA R  L     +GE          E   AG  LA Q   FE   +  AL RH+G+I
Sbjct: 364 LANVAERQVL----GLGE-------PEPEGVEAGQSLAAQQEAFEAHCLKAALTRHKGDI 412

Query: 418 SEVMKELDLPRRTLNQKMQKFGLLRGDF 445
             V+ EL LPRRTLN+KMQ+ GL+R  F
Sbjct: 413 KAVLAELQLPRRTLNEKMQRHGLVREMF 440