Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  286 bits (731), Expect = 1e-81
 Identities = 181/454 (39%), Positives = 255/454 (56%), Gaps = 39/454 (8%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           ++ L+EDD  +R+A    L LAG D        +AL A+EQ+SF+ VVSDV +P  DG  
Sbjct: 4   KVLLVEDDRALREALADTLLLAGHDYRAVGSAEAALEAVEQESFSLVVSDVNMPGMDGHQ 63

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           LL  L+  Q  +PV+L+T HG V+ AV A+ QGA D++ KPF+P+ L   V +      +
Sbjct: 64  LLGLLRARQPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIELVVR------H 117

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
           AL        +  + G E  +  +  S QLL E  A+VA  D+ V+I GE+G GKE++A+
Sbjct: 118 ALG------VIPPSDG-EGPIAFEPASAQLL-ELAARVARSDSTVLISGESGTGKEVLAR 169

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            +HQ S R +  F+AINC AIP+N+ E+ LFGHE G+FTGA+  + GK E AD GT+ LD
Sbjct: 170 YIHQQSTRAKQPFIAINCAAIPDNMLEATLFGHEKGSFTGAIAAQAGKFEQADGGTILLD 229

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQH---AEFRQDLFY 301
           EI  MPL +Q K+LRVLQ+  VERVG+ +PI +D+RV+A    +L        FR+DLFY
Sbjct: 230 EISEMPLGLQAKLLRVLQEREVERVGARKPIQLDIRVVATTNRDLAGEVAAGRFREDLFY 289

Query: 302 RLNVAQLYLPPLRERGDDILLLFE----HFCVQVKPTWRSLSEADRLALLTYRWPGNVRE 357
           RL+V  L   PLRER  DI+ L E    +   ++K     LS   +  L+ Y WPGNVRE
Sbjct: 290 RLSVFPLAWRPLRERPADIIPLAERLLNNHVKKMKHAQAGLSAEAQACLIAYPWPGNVRE 349

Query: 358 LRNVALRYAL----------DDSISVGE------ILASCPGMTEEEASAGLPLAIQVHNF 401
           L N   R  +          D  +++G        LA  P + E E +  L   ++   F
Sbjct: 350 LDNAIQRALILQQGGLIQPQDFCLAMGSGAAPLPTLAPTPVVVEAETAGALGDDLRRREF 409

Query: 402 ERKVIAQALHRHQGNISEVMKELDLPRRTLNQKM 435
           +  +I   L   +G   E  + L +  RTL  K+
Sbjct: 410 Q--MIIDTLRSERGRRKEAAERLGISPRTLRYKL 441