Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 458 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  373 bits (957), Expect = e-108
 Identities = 211/462 (45%), Positives = 291/462 (62%), Gaps = 27/462 (5%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           ++ LI+DD  +RQA  Q L LAG +V    +     A + +     VVSD+R+P  DGL 
Sbjct: 8   QVVLIDDDPHLRQALCQTLDLAGLNVLTLGEATGLTARLSRDWPGVVVSDIRMPGMDGLE 67

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           LL  L      +PV+LITGHGDV +AV+A+  GA+DF+EKPF  + L ++V +A++  + 
Sbjct: 68  LLAELHGQDPELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFASDALLDSVRRALALRRL 127

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
            L ++S    L+  + L   L+G    +  LREQI  +AA   +V+I GETG GKE+VA+
Sbjct: 128 VLDNRSLRLALSDRQQLSTRLVGHSPQMLRLREQIGALAATRADVLILGETGAGKEVVAR 187

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            LH  S R+ G FVAIN GA+ E++ ESELFGHE GAFTGA KRRIGK E A+ GTLFLD
Sbjct: 188 ALHDLSSRRSGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLD 247

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---FRQDLFY 301
           EIESM L +QVK+LR+LQ+ VVER+G NQ I +D+R+IAA KE+LRQ A+   FR DL+Y
Sbjct: 248 EIESMSLDVQVKLLRLLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRADLYY 307

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHFCVQVKP----TWRSLSEADRLALLTYRWPGNVRE 357
           RLNVA L +PPLRERG+D L+LF+HF  +           L    R  LL + WPGNVRE
Sbjct: 308 RLNVAPLRIPPLRERGEDALMLFQHFADEASSRHGLPLHELQPGQRALLLRHSWPGNVRE 367

Query: 358 LRNVALRYAL---------DDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQ 408
           L+N A R+AL          D+ S G + ++  G++E           QV  FE+ +IA 
Sbjct: 368 LQNAAERFALGLELALDNTPDNPSAGTLTSTPGGLSE-----------QVEQFEKSLIAA 416

Query: 409 ALHRHQGNISEVMKELDLPRRTLNQKMQKFGLLRGDFTAQEE 450
            L R   ++  + + L +PR+TL+ K++K GL   + ++ +E
Sbjct: 417 ELTRPHSSMRSLAEALGVPRKTLHDKLRKHGLNFANQSSDDE 458