Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 449 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  384 bits (986), Expect = e-111
 Identities = 217/442 (49%), Positives = 278/442 (62%), Gaps = 15/442 (3%)

Query: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65
           + ++EDD  V     Q L L             AL  I +     V+SD+RLP  DGL L
Sbjct: 14  VLIVEDDPHVLLGCQQALALEDIPSVGVGSAEEALKRIGENFAGIVISDIRLPGIDGLEL 73

Query: 66  LVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNA 125
           L  LK +   +PV+LITGHGD+ MAV A+  GA+DF+EKPF PERL +   +A+ Q   A
Sbjct: 74  LTRLKALDKSLPVVLITGHGDISMAVGAMRNGAYDFMEKPFSPERLVDVARRALEQRGLA 133

Query: 126 LSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQC 185
               S    LA    LE  +IG+  ++Q LRE IA VA    NV+I GETG GKELVA+C
Sbjct: 134 REVWSLRRQLAERDSLEGRIIGRSPAMQNLRELIANVADTSANVLIEGETGTGKELVARC 193

Query: 186 LHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDE 245
           LH  S R   QFVA+NCG +PENLFESE+FGHEA AFTGA KRRIGK+E A +GTLFLDE
Sbjct: 194 LHDFSRRHAHQFVALNCGGLPENLFESEIFGHEANAFTGAGKRRIGKIEHAHEGTLFLDE 253

Query: 246 IESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAK---EELRQHAEFRQDLFYR 302
           +ESMP+ +Q+K+LRVLQ+  +ER+GSNQ + +D RVIAA K   +EL +  +FR DL+YR
Sbjct: 254 VESMPINLQIKLLRVLQERTLERLGSNQSVAVDCRVIAATKSDLDELSRANQFRSDLYYR 313

Query: 303 LNVAQLYLPPLRERGDDILLLFEHFCVQVKPTW-RSLSEADR---LALLTYRWPGNVREL 358
           LNV  L LPPLRER +DIL LFEHF  Q    + RS+ E D     +L+++ WPGNVREL
Sbjct: 314 LNVVTLELPPLRERREDILQLFEHFLQQSSLRFDRSVPELDNQTLSSLMSHDWPGNVREL 373

Query: 359 RNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNIS 418
           RNVA R+AL         L +         S GL     V  FER ++  AL R  GN++
Sbjct: 374 RNVAERFALG--------LPAFKKSGTSSGSQGLAFTEAVEAFERNLLNDALQRSGGNLT 425

Query: 419 EVMKELDLPRRTLNQKMQKFGL 440
           +  +EL + + TL  K++K+GL
Sbjct: 426 QASQELGMAKTTLFDKVKKYGL 447