Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Two-component system response regulator protein from Variovorax sp. SCN45

 Score =  268 bits (685), Expect = 3e-76
 Identities = 176/456 (38%), Positives = 252/456 (55%), Gaps = 25/456 (5%)

Query: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65
           + +++DDD  R    + LQ  G +    A GA A+    +Q F AV  D R+P  DGL  
Sbjct: 4   LLIVDDDDAFRDTLAETLQGLGHETVAVASGAEAVDTASRQRFDAVFLDHRMPGMDGLQT 63

Query: 66  LVALK-NVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           L AL+  +  L PVI++T        ++A+  GAFD + KP   E +   + +A+ Q+  
Sbjct: 64  LAALQARMARLPPVIVLTAFSSAGNTIEAMRLGAFDHLAKPISREAVREVLQRALQQHTA 123

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
           A S+ +         G +  LIG  ++++ + ++I   AA    V++ GETG GKE+VA+
Sbjct: 124 ASSAATVTQ--DDDDGTD--LIGPSQAMREVHKRIGLAAANSMPVLVLGETGTGKEMVAR 179

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            LH+ S R    FVA+NC AIP+ L ESELFGH  GAFTGA   R G    AD G L LD
Sbjct: 180 ALHRHSARAGRPFVAVNCSAIPKELLESELFGHVRGAFTGATGERPGCFRAADGGVLLLD 239

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELR---QHAEFRQDLFY 301
           EI  M L +Q K+LR LQ+  V  +GS++ + +D+RV+AA   +L    +   FR+DL Y
Sbjct: 240 EIGDMSLDVQAKILRALQEGEVTPLGSHRTVKVDVRVVAATHRDLAAAVREGRFREDLLY 299

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHF----CVQVKPTW---RSLSEADRLALLTYRWPGN 354
           RL+V  + +PPLRER  DI+ L EHF     +Q  P     ++LS      LL++ WPGN
Sbjct: 300 RLDVLSIRMPPLRERLADIIPLAEHFLRRAAMQGAPDAVPNKALSAEAAQRLLSHPWPGN 359

Query: 355 VRELRNVALR-YALDDSISVG--EILASCPGMTEEEASAGLP-------LAIQVHNFERK 404
           VRELRNV  R +AL     +G  ++  +       EASA LP       L   V   ER 
Sbjct: 360 VRELRNVMERCHALVRHRVIGGADLDLALGASPAGEASATLPADWLEGELPAAVERLERL 419

Query: 405 VIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGL 440
           +IA AL + QGN +E  + L + R+ L +K+ ++GL
Sbjct: 420 LIAHALAQTQGNRAETARRLGIHRQLLYRKLAQYGL 455