Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 453 a.a., Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake from Variovorax sp. SCN45

 Score =  389 bits (998), Expect = e-112
 Identities = 216/448 (48%), Positives = 288/448 (64%), Gaps = 10/448 (2%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           R+ L+EDD+ VR +T Q L LAGF+V  FA    A A I     A V+SDVRLP   G  
Sbjct: 8   RVLLVEDDEDVRLSTTQVLTLAGFEVEAFASAERARAHISFGVPAIVISDVRLPGMSGTE 67

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
            L  L    + +PVIL+TGHG + MAV+A+ +GA+DFIEKPF  ERL   V  A+ + Q 
Sbjct: 68  WLGELHTADAELPVILVTGHGHIAMAVQAMREGAYDFIEKPFSSERLVAIVRHAIERRQL 127

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
            L  ++    L +  G++ +LIG+   +Q +R  +  +A    +V+IYGETG GKELVAQ
Sbjct: 128 TLQVRTLRDALENWNGIQSVLIGRSAQMQQVRRTVMTLAETSADVLIYGETGTGKELVAQ 187

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
           CLH  SER+R  FV +NCG +PE L ESELFGHEAGAFT A + R+GK E A+ GTLFLD
Sbjct: 188 CLHAHSERRRRHFVPLNCGGLPEALAESELFGHEAGAFTSANRARVGKFEYANGGTLFLD 247

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---FRQDLFY 301
           EIESMP+ +Q+K+LR LQ+  +ER+GSN+ I  D RV+AA+KE+L++ ++   FR DL+Y
Sbjct: 248 EIESMPMPVQIKLLRALQERSIERIGSNKAIPFDCRVVAASKEDLKEMSDRQKFRADLYY 307

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHFCV----QVKPTWRSLSEADRLALLTYRWPGNVRE 357
           RL VA + LPPLRER +DI LLFEHF +    + +   + L+ A    L+ Y WPGNVRE
Sbjct: 308 RLGVAFIELPPLRERREDIPLLFEHFTLLAANRYERAAQPLTNAQLADLMAYAWPGNVRE 367

Query: 358 LRNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNI 417
           LRNVA R+ L     +GE L    G  E   +    L  QV  FER VI +AL +H+G+ 
Sbjct: 368 LRNVADRFVLG---LLGERLTQTRGTGEGLPALPRALPQQVEAFERAVIVEALRKHKGDQ 424

Query: 418 SEVMKELDLPRRTLNQKMQKFGLLRGDF 445
                 L + R+TL+ K++KF +L  DF
Sbjct: 425 PATAAALAIARQTLHDKLRKFDILADDF 452