Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 451 a.a., two component system AtoC DNA-binding transcriptional activator from Pseudomonas putida KT2440

 Score =  289 bits (739), Expect = 1e-82
 Identities = 182/450 (40%), Positives = 246/450 (54%), Gaps = 37/450 (8%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           ++ L+EDD ++RQA G  L++ GF          AL A+ + +F+ VVSDV +P  DG  
Sbjct: 4   KVLLVEDDRVLRQALGDTLEIGGFAYQAVGSAEEALEAVLEDAFSLVVSDVNMPGMDGHQ 63

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           LL  L+  Q  +PV+L+T H  V+ AV+A+ QGA D++ KPF+P+ L N V +       
Sbjct: 64  LLSQLRRQQPQLPVLLMTAHAAVERAVEAMRQGAADYLVKPFEPKALLNLVER------- 116

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
                   H      G E  +  +  S QLL E  A+VA  D+ V+I GE+G GKE++A+
Sbjct: 117 --------HAAGRVTGEEGPVACEPASRQLL-ELAARVARSDSTVLISGESGTGKEVLAR 167

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            +HQ S R    FVAINC AIP+N+ E+ LFGHE GAFTGA+  + GK E A+ GTL LD
Sbjct: 168 YIHQQSPRAAQPFVAINCAAIPDNMLEATLFGHEKGAFTGAIAAQAGKFEQAEGGTLLLD 227

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQH---AEFRQDLFY 301
           EI  MP+A+Q K+LRVLQ+  VERVG  +PI++D+RV+A    +L        FR+DL+Y
Sbjct: 228 EISEMPMALQAKLLRVLQEREVERVGGRKPISLDIRVLATTNRDLAGEVAAGRFREDLYY 287

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHF----CVQVKPTWRSLSEADRLALLTYRWPGNVRE 357
           RL+V  L   PLRER  DIL L E        ++K     LS A R  L  Y WPGNVRE
Sbjct: 288 RLSVFPLAWRPLRERPGDILQLAERLLARHVAKMKHASVRLSPAARACLQAYAWPGNVRE 347

Query: 358 LRNVALRYALDDSISVGEILASC------------PGMTEEEASAGLPLAIQVHNFERKV 405
           L N   R  +     V E    C            P + E  A AG  L   +   E ++
Sbjct: 348 LDNALQRALILQQGGVIEAADFCLAGAIPLSAGTEPSL-EVVADAG-GLGDDMRRHEYQM 405

Query: 406 IAQALHRHQGNISEVMKELDLPRRTLNQKM 435
           I   L   +G   E  + L +  RTL  K+
Sbjct: 406 IIDTLRAERGRRKEAAERLGISPRTLRYKL 435