Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 468 a.a., C4-dicarboxylate transport transcriptional regulatory protein from Pseudomonas putida KT2440

 Score =  378 bits (970), Expect = e-109
 Identities = 213/443 (48%), Positives = 285/443 (64%), Gaps = 9/443 (2%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           ++ L++DD  +RQA  Q L LAG  V   A+       IE      VVSD+R+P  DGL 
Sbjct: 12  QVILVDDDPHLRQALSQTLDLAGLKVVALAEAQGLAERIEADWPGVVVSDIRMPGIDGLQ 71

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
           LL  L    S +PV+LITGHGDV +AV+A+  GA+DF+EKPF  + L ++V +A++  + 
Sbjct: 72  LLEQLHGRDSELPVLLITGHGDVPLAVQAMRAGAYDFLEKPFATDALLDSVRRALALRRL 131

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
            L ++S    L+  + L   L+G   ++  LREQI  +A    +V+I GETG GKE+VA+
Sbjct: 132 VLDNRSLRLALSDRQQLATRLVGHSPAMLRLREQIGALAGTRADVLILGETGAGKEVVAR 191

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            LH  S R  G FVAIN GA+ E++ ESELFGHE GAFTGA KRRIGK E A+ GTLFLD
Sbjct: 192 ALHDLSSRSEGPFVAINAGALAESVVESELFGHEPGAFTGAQKRRIGKFEFANGGTLFLD 251

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---FRQDLFY 301
           EIESM L +QVK+LR+LQ+ VVER+G NQ I +D+R+IAA KE+LRQ A+   FR DL+Y
Sbjct: 252 EIESMSLDVQVKLLRMLQERVVERLGGNQLIPLDIRIIAATKEDLRQSADQGRFRADLYY 311

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHFCVQVKP----TWRSLSEADRLALLTYRWPGNVRE 357
           RLNVA L +PPLRERGDDIL+LF+HF          +  +L  A R  LL + WPGNVRE
Sbjct: 312 RLNVAPLRIPPLRERGDDILVLFQHFADAASQRHGLSPHALQPAQRALLLRHDWPGNVRE 371

Query: 358 LRNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRHQGNI 417
           L+N A R+AL   +++     S         S    L+ QV  FER +IA  L +  G++
Sbjct: 372 LQNAAERFALGLELALDGQAPSAAAPAAPMLSGN--LSEQVEQFERSLIAAELAQPHGSM 429

Query: 418 SEVMKELDLPRRTLNQKMQKFGL 440
             + + L +PR+TL+ K++K GL
Sbjct: 430 RSLAEALGIPRKTLHDKLRKHGL 452