Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 445 a.a., sigma-54-dependent Fis family transcriptional regulator from Magnetospirillum magneticum AMB-1

 Score =  392 bits (1007), Expect = e-113
 Identities = 216/452 (47%), Positives = 299/452 (66%), Gaps = 16/452 (3%)

Query: 1   MESQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDT 60
           M + +I  ++D++ +R A  QWL LAGFDV + A    AL  + +     +VSDVR+P  
Sbjct: 1   MSAGQILFVDDEEPMRIAVKQWLGLAGFDVTVLARPEGALGRLSRDFPGILVSDVRMPGL 60

Query: 61  DGLSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120
           DG+ LL A +     +PVIL+TGHGD+ +AV+A+ +GA+DFIEKPF PERLA  V +A  
Sbjct: 61  DGIGLLKAAQAQDPDLPVILVTGHGDIPLAVEAMREGAYDFIEKPFAPERLAQAVGRACE 120

Query: 121 QYQNALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKE 180
           + +  L ++ R   L +   + + LIG  ++++ +R Q+ ++A +  NV+I+G+TGCGKE
Sbjct: 121 KRRLVLENR-RLRALGAGDDMARRLIGPSQAMENVRAQVRELAPLPLNVVIFGDTGCGKE 179

Query: 181 LVAQCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGT 240
           LVA+CLH    R    FVA+NC AIPE +FESE FGHEAGAFTGA +RR GK+E A  GT
Sbjct: 180 LVARCLHDCGPRAARPFVAVNCAAIPETMFESEFFGHEAGAFTGAAQRRAGKVEHAHGGT 239

Query: 241 LFLDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELR---QHAEFRQ 297
           LFLDE+ESMPLA+Q K+LRVLQ+  +E +G N+ I +DLRVI AAK +L    +   FR+
Sbjct: 240 LFLDEVESMPLALQAKLLRVLQERCIEPLGGNRTIPVDLRVITAAKADLLAEVRAGRFRE 299

Query: 298 DLFYRLNVAQLYLPPLRERGDDILLLFEHFCVQVK----PTWRSLSEADRLALLTYRWPG 353
           DL+YRL+VA++ LPPL ER +DI+ LFE F          T  +L+E +  ALL + WPG
Sbjct: 300 DLYYRLHVAEIRLPPLAERREDIVALFESFAALAANAHGRTPPTLTEGNVQALLAHDWPG 359

Query: 354 NVRELRNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALHRH 413
           NVRELRN A R+AL      G  L +   +  E    GL  ++ +  FER+ I  A  + 
Sbjct: 360 NVRELRNEAERFAL------GLGLRAAAPVAAEAQGDGLQASVAL--FERQRIEAAFIQA 411

Query: 414 QGNISEVMKELDLPRRTLNQKMQKFGLLRGDF 445
           QG+++EVM+ LDLPRRTLN+KM K+G+ R  F
Sbjct: 412 QGDVAEVMRLLDLPRRTLNEKMAKYGIDRRRF 443