Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  275 bits (704), Expect = 2e-78
 Identities = 170/474 (35%), Positives = 252/474 (53%), Gaps = 40/474 (8%)

Query: 1   MESQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDT 60
           M+   + +++DD  +R    + L  AG     F +GA  L A+  ++   ++SD+R+P  
Sbjct: 1   MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGM 60

Query: 61  DGLSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120
           DGL+LL  +K    ++PVI++T H D+D AV A  QGAFD++ KPF  +     V +A+S
Sbjct: 61  DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120

Query: 121 QYQNALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKE 180
            YQ     ++         G    +IG+  ++Q +   I +++    +V+I GE+G GKE
Sbjct: 121 HYQEQQQPRN-----VQLNGPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKE 175

Query: 181 LVAQCLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGT 240
           LVA  LH+ S R +  F+A+N  AIP++L ESELFGHE GAFTGA   R G+ E AD GT
Sbjct: 176 LVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGT 235

Query: 241 LFLDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---FRQ 297
           LFLDEI  MPL +Q ++LRVL D    RVG   P+ +D+R+IAA  + L Q  +   FR+
Sbjct: 236 LFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFRE 295

Query: 298 DLFYRLNVAQLYLPPLRERGDDILLLFEHF----CVQVKPTWRSLSEADRLALLTYRWPG 353
           DLF+RLNV +++LPPLRER +DI  L  HF      ++    + L      AL    WPG
Sbjct: 296 DLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPG 355

Query: 354 NVRELRNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNF------------ 401
           NVR+L N   R+    +     ++   PG   E   A     +Q  ++            
Sbjct: 356 NVRQLENTC-RWLTVMAAGQEVLIQDLPGELFESTVAESTSQMQPDSWATLLAQWADRAL 414

Query: 402 ---------------ERKVIAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGL 440
                          ER ++  AL   QG+  E  + L   R TL +K+++ G+
Sbjct: 415 RSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGM 468