Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 444 a.a., predicted DNA-binding response regulator in two-component system (NCBI) from Escherichia coli BW25113

 Score =  271 bits (692), Expect = 4e-77
 Identities = 167/449 (37%), Positives = 239/449 (53%), Gaps = 23/449 (5%)

Query: 6   IALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLSL 65
           + L++DD  + +  G  L   G+ V     GA  L  + ++    V+SD+R+ + DG+ L
Sbjct: 8   LLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRVLNREKVDLVISDLRMDEMDGMQL 67

Query: 66  LVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQNA 125
              ++ VQ  MPVI++T HG +  AV A  QG F F+ KP   + L   +  A+ Q   A
Sbjct: 68  FAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDKDALYQAIDDALEQSAPA 127

Query: 126 LSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQC 185
              + R           + ++ +   +  L EQ   VA  D +V+I G++G GKE+ AQ 
Sbjct: 128 TDERWR-----------EAIVTRSPLMLRLLEQARLVAQSDVSVLINGQSGTGKEIFAQA 176

Query: 186 LHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLDE 245
           +H AS R    F+AINCGA+PE L ESELFGH  GAFTGAV  R G  + A+ GTLFLDE
Sbjct: 177 IHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236

Query: 246 IESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQ---HAEFRQDLFYR 302
           I  MP  +QVK+LRVLQ+  V  +GSN+ I I++R+I+A   +L +     EFR+DL+YR
Sbjct: 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEFREDLYYR 296

Query: 303 LNVAQLYLPPLRERGDDILLLFEHFCVQV----KPTWRSLSEADRLALLTYRWPGNVREL 358
           LNV  L +P L ER +DI LL  H   Q     KP  R+ S      L+T  WPGNVR+L
Sbjct: 297 LNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQL 356

Query: 359 RNVALR-YALDDSISVGEILASCPGMTEEEASAGLPLAIQVHN-FERKVIAQALHRHQGN 416
            NV  +  AL  S  + + L        E  +  LP  ++  N FE   + + L   +GN
Sbjct: 357 VNVIEQCVALTSSPVISDALVE---QALEGENTALPTFVEARNQFELNYLRKLLQITKGN 413

Query: 417 ISEVMKELDLPRRTLNQKMQKFGLLRGDF 445
           ++   +     R    + + +  L   DF
Sbjct: 414 VTHAARMAGRNRTEFYKLLSRHELDANDF 442