Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein from Escherichia coli BL21

 Score =  287 bits (735), Expect = 4e-82
 Identities = 169/455 (37%), Positives = 258/455 (56%), Gaps = 23/455 (5%)

Query: 5   RIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDTDGLS 64
           RI +++D+D VR+       L GF+     +G +AL          V+ D+R+P+ DG+ 
Sbjct: 6   RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65

Query: 65  LLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVSQYQN 124
            L  +++ ++  PVIL+T + +V+ AV+AL  GAFD++ KPF  + L N + Q   Q Q+
Sbjct: 66  ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDEL-NLIVQRALQLQS 124

Query: 125 ALSSQSRAHYLASAKGLEQILIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGKELVAQ 184
                   H   S       ++    ++  + +  AK+A    +V+I GE+G GKEL+A+
Sbjct: 125 MKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIAR 184

Query: 185 CLHQASERQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADKGTLFLD 244
            +H  S R +G F+ +NC A+PE+L ESELFGHE GAFTGA   R G  E A++GTL LD
Sbjct: 185 AIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLD 244

Query: 245 EIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELR---QHAEFRQDLFY 301
           EI  MPL +Q K+LR+LQ+   ER+G +Q I +D+R+IAA   +L+   +   FR+DLFY
Sbjct: 245 EIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFY 304

Query: 302 RLNVAQLYLPPLRERGDDILLLFEHFCVQV-KPTWRSLSEADRLA---LLTYRWPGNVRE 357
           RLNV  L LPPLR+R +DI LL  HF  +      R + + D +A   L  + WPGN+RE
Sbjct: 305 RLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRE 364

Query: 358 LRNVALRYALDDSISVGEILAS---CPGMTEEEASAG---------LPLAIQVHNFERKV 405
           L NV  R  + +S   G I+ S    P + +   +AG           L  ++   E+++
Sbjct: 365 LSNVIERAVVMNS---GPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRI 421

Query: 406 IAQALHRHQGNISEVMKELDLPRRTLNQKMQKFGL 440
           I + L + +GN +     L + RR L  K+Q++G+
Sbjct: 422 IMEVLEQQEGNRTRTALMLGISRRALMYKLQEYGI 456