Pairwise Alignments

Query, 450 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., two component response regulator for C4-dicarboxylate transport from Agrobacterium fabrum C58

 Score =  337 bits (864), Expect = 5e-97
 Identities = 196/454 (43%), Positives = 279/454 (61%), Gaps = 16/454 (3%)

Query: 1   MESQRIALIEDDDIVRQATGQWLQLAGFDVAMFADGASALAAIEQQSFAAVVSDVRLPDT 60
           M    I L++DD  +R+A  Q L+L G  V  F+    ALAA+ +     +++DVR+P  
Sbjct: 2   MADGTIFLVDDDSQLRKAMVQTLELDGLPVTSFSRAEQALAALNEDFDGIIITDVRMPGM 61

Query: 61  DGLSLLVALKNVQSLMPVILITGHGDVDMAVKALHQGAFDFIEKPFQPERLANTVAQAVS 120
            GL     ++ + + +PVILITGHGDV MAV ALH GA+DFI KPF  ER+  +  +A+ 
Sbjct: 62  TGLEFFDHVRKIDADLPVILITGHGDVPMAVDALHNGAYDFIAKPFPAERMVESARRALE 121

Query: 121 QYQNALSSQSRAHYLASAKGLEQI-LIGQCKSIQLLREQIAKVAAMDTNVIIYGETGCGK 179
           + +  L  ++RA   A+ +  + + LIGQ  +++ LR  +  +A  D +V++ GETG GK
Sbjct: 122 KRRLVL--ENRALRRAAGQAEDDLPLIGQTPAMERLRTTLRHIADTDVDVLVAGETGSGK 179

Query: 180 ELVAQCLHQASE-RQRGQFVAINCGAIPENLFESELFGHEAGAFTGAVKRRIGKLELADK 238
           E+VA  LH+ S+ R +G FVA+NCGA+PE + ESELFGHE GAFTGA K+R+G++E +  
Sbjct: 180 EVVATALHRWSKKRSKGNFVALNCGALPETVIESELFGHEPGAFTGAQKKRVGRIEHSSG 239

Query: 239 GTLFLDEIESMPLAMQVKVLRVLQDHVVERVGSNQPITIDLRVIAAAKEELRQHAE---F 295
           GTLFLDEIESMPLA+QVK+LRVL+   V  +GSN+   +D+RV+AAAK +L   AE   F
Sbjct: 240 GTLFLDEIESMPLAVQVKMLRVLEMREVSPLGSNEERPVDIRVVAAAKVDLGDPAERGTF 299

Query: 296 RQDLFYRLNVAQLYLPPLRERGDDILLLFEHFCVQVKPTWR----SLSEADRLALLTYRW 351
           R+DL+YRLNV  L +PPLRER  DI LLF HF  +    +      +S      L  + W
Sbjct: 300 REDLYYRLNVVTLSIPPLRERKADIPLLFSHFVTKAANRFNMPVPQISAGTSRRLQDHDW 359

Query: 352 PGNVRELRNVALRYALDDSISVGEILASCPGMTEEEASAGLPLAIQVHNFERKVIAQALH 411
           PGNVREL + A R  L       E  A+    +   AS  LP   ++   E  +I + L 
Sbjct: 360 PGNVRELGHFAERVVLG---LEAEPAAAPTSQSAIPASGTLP--ERMDEIEAHIIRETLE 414

Query: 412 RHQGNISEVMKELDLPRRTLNQKMQKFGLLRGDF 445
           R  G+++E +  L + R+T   K+Q+ G+ R D+
Sbjct: 415 RSNGDVAETIATLGIARKTFYDKLQRHGINRADY 448