Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 588 a.a., cytochrome C biogenesis protein CcmE from Pseudomonas simiae WCS417

 Score =  164 bits (414), Expect = 1e-44
 Identities = 101/252 (40%), Positives = 150/252 (59%), Gaps = 3/252 (1%)

Query: 434 QNANRDLQQRVEERTAALKSAQQELIEASKMAALGRMSSAITHELNQPLTGLRTLLSSNE 493
           Q +  +L+Q VEERT AL++AQ  L++++K+AALG+MS+A+ HE+NQPLT  R  L++  
Sbjct: 331 QRSREELEQLVEERTQALRTAQDGLVQSAKLAALGQMSAALAHEINQPLTAQRMQLATLR 390

Query: 494 LLLERGETQLLKANTKLVHSLIDRMAAMTSQLKSFAFNRPDAL-QAISLPDALQEILRIH 552
           LLL+ G           +  ++ RMAA+T  LK+FA   P  L + + L   + + L + 
Sbjct: 391 LLLDHGRVDDAYQALTPLDDMLTRMAALTGHLKTFARKSPSGLRERLDLATVVDQSLHLL 450

Query: 553 QARLTPVDVRVRLSSDLPL-VMGEEQRLRQVLGNLVSNALDAMSQTLEPKLSISAVSEED 611
            ARL    + V L    P  V G+  RL QVL NL+ NALDAM      +L I   ++E 
Sbjct: 451 DARLRDESIGVVLDLTRPAWVRGDAIRLEQVLINLLRNALDAMVDKPRKRLEIRLHADEQ 510

Query: 612 QVIVRVSDNGCGIAPELLTTMFEPFQTSKKMGEGLGLGLAIVANSLRDMQGSIVATNNPD 671
              + VSD+G GIA E L ++F+PF T+K +G+GLGLGLA+    + ++ G ++A+N  D
Sbjct: 511 LWQLTVSDSGGGIAEEHLNSVFDPFFTTKPVGDGLGLGLAVSYAIVHELGGRLIASNRGD 570

Query: 672 AGMSFEIRLRAA 683
            G  F + L  A
Sbjct: 571 -GAVFTLTLPIA 581



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 44/211 (20%), Positives = 91/211 (43%), Gaps = 17/211 (8%)

Query: 1   MKLNKASWIVLVILLLIAVRWGSHAVSENWQLRQAQRHGEQRLLDYISDVRRTLSRFYHL 60
           ++L   S +++   LL A     HA  E   L        Q+L  Y + +   + R+  L
Sbjct: 8   LRLTFYSLLIIAGALLAAALATRHA--ERQALVDDAARANQQLALYANSLHTLIERYRAL 65

Query: 61  PYLMTNEANTLKLFQG--DDRPQAQLQQQLAQLDKAANTKGWYILTLSGSLLTASKNAEN 118
           P ++  ++  +   +G  D   Q  L ++L +++ AA +    ++  +G  + AS    N
Sbjct: 66  PAVLALDSEMINALKGPLDTATQDLLNRKLERINGAAQSSTLELMDRTGLAVAAS----N 121

Query: 119 WKLSDG--------KAIIHKILQQREGISIVTKSVGSTPTYFVAAPVYLDVE-IVGAVAV 169
           W L           +    + L Q  G           P YF+++ V  + E  +GA+ V
Sbjct: 122 WNLPSSYVGHNYAFRPYFSQTLSQGTGRFYAVGVTTGIPGYFLSSAVVDEHEQFLGAMVV 181

Query: 170 QVDLNVLADQWFASDELILFQNSQRHYFLSS 200
           +++   L  +W   ++L+L  +++   F+++
Sbjct: 182 KLEFPELEREWAQGNDLLLVSDARGIVFIAN 212