Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 633 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  171 bits (432), Expect = 1e-46
 Identities = 114/304 (37%), Positives = 161/304 (52%), Gaps = 32/304 (10%)

Query: 394 SDGSLFPVLFSLIA---VSWKDRRHYLVTLIDISKRKKAEIALQNANRDLQQRVEERTAA 450
           + G L  V F L+A   ++W +RR  + T      R  A  ALQ AN  L++R+ ERTA 
Sbjct: 319 NQGILVAVAFGLVAFLLIAWNERRKVIAT------RLAAREALQEANSQLERRIAERTAD 372

Query: 451 LKS---------------------AQQELIEASKMAALGRMSSAITHELNQPLTGLRTLL 489
           L++                     AQ EL++A K+AA+G+MS++I HELNQPL  LRTL 
Sbjct: 373 LRASNERLKGQIRERRQAEETLRRAQDELVQAGKLAAIGQMSTSIAHELNQPLAALRTLS 432

Query: 490 SSNELLLERGETQLLKANTKLVHSLIDRMAAMTSQLKSFAFNRPDALQAISLPDALQEIL 549
            +    LERG      AN K ++ LIDRM  +T+ L+SFA  R D     SL  A+    
Sbjct: 433 GNTVRFLERGALDTASANLKTINELIDRMGRITASLRSFA-RRGDDQGEASLAKAVDAAF 491

Query: 550 RIHQARLTPVDVRVRLSSDLPLVMGEEQRLRQVLGNLVSNALDAMSQTLEPKLSISAVSE 609
           ++  ARL  + + +        +  ++ RL Q+L NL+ NALDAM     P+L +   S 
Sbjct: 492 QVLGARLDSLPLTLHRDFSHAQLQIDQTRLEQILVNLIGNALDAMQAQPAPELWLEGSSA 551

Query: 610 EDQVIVRVSDNGCGIAPELLTTMFEPFQTSKKMGEGLGLGLAIVANSLRDMQGSIVATNN 669
           + +  + V DNG GI PE    +FEPF T+K   +GLGLGL + A SL    G  +A  +
Sbjct: 552 DGKYRLHVRDNGHGIDPEARKHLFEPFFTTKPGEQGLGLGLTLSA-SLAAATGGNLAVEH 610

Query: 670 PDAG 673
           P +G
Sbjct: 611 PASG 614



 Score = 67.8 bits (164), Expect = 2e-15
 Identities = 77/312 (24%), Positives = 136/312 (43%), Gaps = 43/312 (13%)

Query: 11  LVILLLIAVRWGSHAVSENWQLRQAQRHGEQRLLDYISDVRRTLSRFYHLPYLMTNEANT 70
           L+I L+I + +    VSE + +R     GE++L  +   V   LS++ +LP L+  E++ 
Sbjct: 30  LIIALMIGLGYIGFWVSEYYGIRTLSDTGERQLELHARTVESELSKYTYLPSLLELESSV 89

Query: 71  LKLF-QGDDRPQAQLQQQLAQLDKAANTKGWYILTLSGSLLTASKNAENWKLSDG----- 124
             L    +   +  +   L  L++ + ++  Y++  +G +L  S    NW+ +D      
Sbjct: 90  SALLADPNQETRKTVNDYLEGLNRRSRSRAIYVMDTTGRVLATS----NWRDADSYQGED 145

Query: 125 ---KAIIHKILQQREGISIVTKSVGSTPTYFVAAPVYLDVEIVGAVAVQVDLNVLADQW- 180
              +A     ++ + G      S    P Y++A  +    +I+G   V+V L  L ++W 
Sbjct: 146 LSFRAYFQNAVRGQPGRFYGIGSTNGEPGYYLAHGLEEHGKIIGVAVVKVRLEALEERWQ 205

Query: 181 ------FASDEL-ILFQNSQRHYFLSSSSVYSAD-----------WIATHPEVVAAAQKR 222
                 F SDE  I+  +S     L +    S D           + AT  E+   A++R
Sbjct: 206 RARLEAFVSDENGIIILSSDPARRLKAVRPLSDDVKERLAHSLQYYWATLNELEPLARER 265

Query: 223 SLFDGTRLTLWQV--------EQAPYLAQSVTLDDLNWTLTYLTPLKNL-NATVN-WIST 272
            L +GT    +           +  YLAQ+  L+D  W  T LTPL +L  A +N  I  
Sbjct: 266 -LNEGTEKLTFPANSEVVNDEHEVSYLAQTRPLNDTPWNFTLLTPLNDLRRAAINQGILV 324

Query: 273 SAMVGVLLLLLL 284
           +   G++  LL+
Sbjct: 325 AVAFGLVAFLLI 336