Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 650 a.a., Two-component system sensor histidine kinase from Variovorax sp. SCN45

 Score =  177 bits (448), Expect = 2e-48
 Identities = 128/346 (36%), Positives = 187/346 (54%), Gaps = 13/346 (3%)

Query: 343 FSLSDSMVRQLQAWSLFDTGNPNATVPLLLKNLTEHQELADITNVETVARRS--DGSLFP 400
           +S  +S+ R +Q  +L DT +  A+   L     +   L D+  V   AR +    SL  
Sbjct: 288 WSQKESLDRNVQVITLDDT-DQLASARTLGGAPWQLMVLDDLAPVRMAARNTAITASLAM 346

Query: 401 VLFSLIAVSWKDRRHYLVTLIDISKRKKA-EIALQNANRDLQQRVEERTAALKSAQQELI 459
            +  L+AV+   RR  L       ++K A + ALQ A+  L+  V  RTA L++AQ EL+
Sbjct: 347 AVLLLVAVALWQRRRAL-------RQKLANQAALQAAHDMLESTVVARTAQLRAAQGELV 399

Query: 460 EASKMAALGRMSSAITHELNQPLTGLRTLLSSNELLLERGETQLLKANTKLVHSLIDRMA 519
            + KMAALG+MS  + HELNQPLT +RTL  S  +LL++     ++ N + +  ++DR+A
Sbjct: 400 HSGKMAALGQMSVGVVHELNQPLTAMRTLSESAGILLDKNRLDDVRGNLQRICGMVDRLA 459

Query: 520 AMTSQLKSFAFNRPDALQAISLPDAL--QEILRIHQARLTPVDVRVRLSSDLPLVMGEEQ 577
            +TSQLK+FA      L  + L  A+   + +    A+   V + V +      VM EE 
Sbjct: 460 RLTSQLKTFAHRSDLPLVPLLLSQAIADAQAMVAEAAKKHRVAIEVDVQPAALSVMAEEA 519

Query: 578 RLRQVLGNLVSNALDAMSQTLEPKLSISAVSEEDQVIVRVSDNGCGIAPELLTTMFEPFQ 637
            L  VL NL+ NA++AM       L + A  +E +VI+ +SD G GI P++L  +FEPF 
Sbjct: 520 ALGSVLVNLMRNAVEAMQDAPLRTLRLVARLDEGRVILSLSDTGPGIRPDILPRLFEPFV 579

Query: 638 TSKKMGEGLGLGLAIVANSLRDMQGSIVATNNPDAGMSFEIRLRAA 683
           TSK  G GLGLGL I A  +R M G++ A N    G  F + L AA
Sbjct: 580 TSKPAGAGLGLGLVISAQLVRAMDGTLRAANQAQGGACFVVDLPAA 625



 Score = 39.7 bits (91), Expect = 5e-07
 Identities = 122/545 (22%), Positives = 207/545 (37%), Gaps = 88/545 (16%)

Query: 8   WIVLVILLLIAVRWGSHAVSENWQLRQAQRHGEQRLLDYISDVRRTLSRFYHLPYL--MT 65
           W   + L+ +A  +  H V+    L + +   + RL    + +   L+RF +LP L  MT
Sbjct: 55  WCAALALVAVAA-FAGHQVAMQTGLARLREAADHRLDMLATGLDADLARFDYLPALLEMT 113

Query: 66  NEANTLKLFQGDDRPQAQLQQQLAQLDKAANTKGWYILTLSGSLLTASKNAENW------ 119
                L     D   +  + + L  ++  A  +  Y+L  SG     S+ A +W      
Sbjct: 114 PIVPALLDTPSDAHLRDAVNRYLDGVNATAGAEMLYVLDRSG----ISQAASDWDKPGTT 169

Query: 120 ---KLSDGKAIIHKILQQR---EGISIVTKSVGSTPTYFVAAPVYLDVEIVGAVAVQVDL 173
               LS    +I  +   R    G+ I +K     P Y+++  +       G VAV+V+L
Sbjct: 170 LGQDLSFRPYMIDALNHGRGRFYGVGITSK----RPGYYLSYALRRGQPTRGVVAVKVNL 225

Query: 174 NVLADQW--FASDELILFQNS----------QRHYFLSSSSVYSADWIATHPEVVAA--- 218
                 W     D  ++ Q            +    L   ++  A+ + + P   AA   
Sbjct: 226 EEAERAWRKLPGDVALIDQRGVVILSTREDLKFRPLLPLDALQRAEVLRSRPYGNAALQP 285

Query: 219 ---AQKRSLFDGTR-LTLWQVEQAPYLAQSVTLDDLNWTLTYLTPLKNLNATVNWISTSA 274
              +QK SL    + +TL   +Q   LA + TL    W L  L  L  +       + +A
Sbjct: 286 LQWSQKESLDRNVQVITLDDTDQ---LASARTLGGAPWQLMVLDDLAPVRMAARNTAITA 342

Query: 275 MVGVLLLLL----LMRLRYEQYQKRLSEAKIQ--HVLFEAEERQRNMINKTHVGLLLIDG 328
            + + +LLL    L + R    QK  ++A +Q  H + E+    R    +   G L+  G
Sbjct: 343 SLAMAVLLLVAVALWQRRRALRQKLANQAALQAAHDMLESTVVARTAQLRAAQGELVHSG 402

Query: 329 Q---------GRIEEINPMAKRYFSLSDSMVRQLQAWSLFDTGNPNATVPLLLKNLTEHQ 379
           +         G + E+N       +LS+S      A  L D    +     L +      
Sbjct: 403 KMAALGQMSVGVVHELNQPLTAMRTLSES------AGILLDKNRLDDVRGNLQRICGMVD 456

Query: 380 ELADITN-VETVARRSDGSLFPVLFSLIAVSWKDRRHYLVTLIDISKRKKAEIALQNANR 438
            LA +T+ ++T A RSD  L P+L S                +     KK  +A++    
Sbjct: 457 RLARLTSQLKTFAHRSDLPLVPLLLSQAIAD--------AQAMVAEAAKKHRVAIE---- 504

Query: 439 DLQQRVEERTAALKSAQQELIEASKMAALGRMSSAITHELNQPLTGLRTL--LSSNELLL 496
                V+ + AAL    +E    S +  L  M +A+    + PL  LR +  L    ++L
Sbjct: 505 -----VDVQPAALSVMAEEAALGSVLVNL--MRNAVEAMQDAPLRTLRLVARLDEGRVIL 557

Query: 497 ERGET 501
              +T
Sbjct: 558 SLSDT 562