Pairwise Alignments

Query, 684 a.a., sensor histidine kinase from Vibrio cholerae E7946 ATCC 55056

Subject, 645 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  103 bits (258), Expect = 2e-26
 Identities = 89/304 (29%), Positives = 144/304 (47%), Gaps = 53/304 (17%)

Query: 425 KRKKAEIALQNANRDLQQRVEERTAALKSAQQELIEASKMAALGRMSSAITHELNQPL-- 482
           + ++A++ L + +  L++ VEERT ALK AQ E ++AS+MA++G++++ I HE+N P+  
Sbjct: 344 RARQAQLELADQHAQLERLVEERTEALKQAQIEALQASRMASVGQLAAGIAHEINTPIQY 403

Query: 483 ------------TGLRTLLSSNELLLER---GETQLLKANTKLVH--------SLIDRMA 519
                         +  LLS    L E    GE    K    L H         + + + 
Sbjct: 404 VGDNLAFIQSAAEAVFPLLSEARALAESWRVGEGDAGKTEEFLQHYDAAGLDFLMEETLP 463

Query: 520 AMTSQLKSFA-----------FNRPDALQ--AISLPDALQEILRI------HQARLTPVD 560
           A+T  L+  A           F+ P   Q  A+ +  AL   L +      H AR+    
Sbjct: 464 AVTQSLEGVAQVARIVLSMKEFSHPGTSQKTAVDINRALDSTLVVCRNTWKHVARM---- 519

Query: 561 VRVRLSSDLPLVMGEEQRLRQVLGNLVSNALDAMSQTLEP---KLSISAVSEEDQVIVRV 617
              R    LPLV      + QV  NL+ NA  A+ ++ +P    ++       D   +R+
Sbjct: 520 -ETRFDPALPLVNCHPGEMNQVFLNLIVNAAHAIEESGKPLPGTITAETALCGDWAEIRI 578

Query: 618 SDNGCGIAPELLTTMFEPFQTSKKMGEGLGLGLAIVANSLRDMQ-GSIVATNNPDAGMSF 676
           SD+G GI+ E+   +F+PF T+K++G+G G GLAI  + + +   G IV    P+ G  F
Sbjct: 579 SDSGTGISDEIAQHIFDPFFTTKEVGKGTGQGLAICYDVVVNKHGGQIVVGGEPEHGAIF 638

Query: 677 EIRL 680
            IR+
Sbjct: 639 TIRI 642