Pairwise Alignments

Query, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score =  141 bits (355), Expect = 2e-38
 Identities = 88/285 (30%), Positives = 163/285 (57%), Gaps = 12/285 (4%)

Query: 11  SAALLSTSVSFVAQAQDTVAIVLSTLNNPFFVTMKDGAEAKAKE--LGYNLIV--LDSQN 66
           SAAL  +S      A+  V +V+ +L N FFVTM+DGA+   KE    +++I   + ++ 
Sbjct: 19  SAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQKEHAADFDMITNGIKNET 78

Query: 67  DPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGA------SRG 120
           D S ++  V  + +  V AI+I P DS A+   ++ A+ + I V+ +D         S+ 
Sbjct: 79  DTSAQIDIVNQMILAKVNAIVIAPADSKALVTVLKKASDAGIKVVNIDNRLDPDVLKSKN 138

Query: 121 EVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAGTSAARERGEGFMNAVKGSKMQ 180
             +  +  DN  G ++ G ++  ++ S  KV  +EG+  T+ A++R  G+ +A+  + M+
Sbjct: 139 LDIPFVGPDNRKGSKLVGDYLAKQLASGDKVGIIEGVPTTTNAQQRTAGYKDAMDAAGMK 198

Query: 181 LLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQASGKS--VMIVGF 238
           ++++Q  +++  +G  V   +L+  PD++A+ A ND MALGA+ A++A+GK+  V++VG+
Sbjct: 199 IVSTQSGNWEIDQGQKVASAMLSEYPDLKALLAGNDNMALGAVSAVRAAGKAGKVLVVGY 258

Query: 239 DGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEKVEA 283
           D  +     ++ G++ AT  Q        GI+ A K++KGEKV++
Sbjct: 259 DNIEAIKPMLQDGRVLATADQAAAQQAVFGIQNALKLVKGEKVDS 303